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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
MRQFKVSHPGEMIARDLEDMGVSGRRFAHNIGVTPATVSRLLAGKTALTPSLSIRIAAAL
GSTPEFWLRLQSNYDLRQLENQIDTSGIVLYGE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4mcx-a1-m1-cA 93 93 1.0000 1.0000 1.0000 8.69e-66 4mcx-a1-m1-cC_4mcx-a1-m1-cA
2 4mcx-a1-m1-cC 92 92 0.9892 1.0000 1.0000 7.25e-65 4mcx-a1-m1-cC_4mcx-a1-m1-cA
3 2ict-a2-m2-cA 89 84 0.3763 0.3933 0.4167 9.67e-15 2ict-a2-m1-cA_2ict-a2-m2-cA
4 2ict-a2-m1-cA 89 84 0.3763 0.3933 0.4167 9.67e-15 2ict-a2-m1-cA_2ict-a2-m2-cA
5 6f8h-a2-m1-cB 94 76 0.3011 0.2979 0.3684 4.55e-14 6f8h-a2-m3-cC_6f8h-a2-m1-cB
6 6f8h-a2-m3-cC 93 76 0.3011 0.3011 0.3684 5.95e-14 6f8h-a2-m3-cC_6f8h-a2-m1-cB
7 3trb-a2-m1-cA 89 74 0.2796 0.2921 0.3514 1.58e-13 3trb-a2-m1-cA_3trb-a2-m1-cB
8 3trb-a2-m1-cB 90 73 0.2796 0.2889 0.3562 1.60e-13 3trb-a2-m1-cA_3trb-a2-m1-cB
9 3trb-a1-m2-cB 90 73 0.2796 0.2889 0.3562 1.60e-13 3trb-a1-m1-cB_3trb-a1-m2-cB
10 3trb-a1-m1-cB 90 73 0.2796 0.2889 0.3562 1.60e-13 3trb-a1-m1-cB_3trb-a1-m2-cB
11 2eby-a1-m1-cB 98 82 0.2688 0.2551 0.3049 2.25e-07 2eby-a1-m1-cB_2eby-a1-m1-cA
12 2eby-a1-m1-cA 102 83 0.2688 0.2451 0.3012 3.02e-07 2eby-a1-m1-cB_2eby-a1-m1-cA
13 6lb3-a3-m1-cD 92 87 0.2581 0.2609 0.2759 2.16e-06 6lb3-a3-m1-cD_6lb3-a3-m1-cC
14 6lb3-a3-m1-cC 93 87 0.2581 0.2581 0.2759 2.30e-06 6lb3-a3-m1-cD_6lb3-a3-m1-cC
15 5ttx-a3-m1-cC 148 43 0.1720 0.1081 0.3721 0.43 5ttx-a3-m1-cC_5ttx-a3-m1-cB
16 5ttx-a1-m2-cC 148 43 0.1720 0.1081 0.3721 0.43 5ttx-a1-m2-cC_5ttx-a1-m1-cA
17 5ttx-a3-m1-cB 151 43 0.1720 0.1060 0.3721 0.51 5ttx-a3-m1-cC_5ttx-a3-m1-cB
18 5ttx-a1-m1-cA 151 43 0.1720 0.1060 0.3721 0.51 5ttx-a1-m2-cC_5ttx-a1-m1-cA
19 6af4-a2-m1-cD 92 45 0.1290 0.1304 0.2667 0.66 6af4-a2-m1-cF_6af4-a2-m1-cD
20 6af4-a2-m1-cF 91 45 0.1290 0.1319 0.2667 0.74 6af4-a2-m1-cF_6af4-a2-m1-cD
21 2m89-a1-m1-cB 134 71 0.2043 0.1418 0.2676 1.9 2m89-a1-m1-cA_2m89-a1-m1-cB
22 2m89-a1-m1-cA 134 71 0.2043 0.1418 0.2676 1.9 2m89-a1-m1-cA_2m89-a1-m1-cB
23 2hk3-a1-m1-cB 331 35 0.1398 0.0393 0.3714 2.8 2hk3-a1-m1-cA_2hk3-a1-m1-cB
24 2hk3-a1-m1-cA 331 35 0.1398 0.0393 0.3714 2.8 2hk3-a1-m1-cA_2hk3-a1-m1-cB
25 1yox-a2-m1-cE 198 27 0.1183 0.0556 0.4074 5.6 1yox-a2-m1-cE_1yox-a2-m1-cD
26 1yox-a2-m1-cD 204 27 0.1183 0.0539 0.4074 5.9 1yox-a2-m1-cE_1yox-a2-m1-cD
27 3f51-a3-m1-cF 93 45 0.1505 0.1505 0.3111 6.1 3f51-a3-m1-cD_3f51-a3-m1-cF
28 1rpe-a1-m1-cR 63 50 0.1505 0.2222 0.2800 6.6 1rpe-a1-m1-cL_1rpe-a1-m1-cR
29 1rpe-a1-m1-cL 63 50 0.1505 0.2222 0.2800 6.6 1rpe-a1-m1-cL_1rpe-a1-m1-cR
30 3f51-a3-m1-cD 93 45 0.1505 0.1505 0.3111 6.7 3f51-a3-m1-cD_3f51-a3-m1-cF
31 4ham-a1-m2-cA 133 19 0.1183 0.0827 0.5789 7.7 4ham-a1-m1-cA_4ham-a1-m2-cA
32 4ham-a1-m1-cA 133 19 0.1183 0.0827 0.5789 7.7 4ham-a1-m1-cA_4ham-a1-m2-cA
33 5fyd-a1-m1-cB 252 44 0.1505 0.0556 0.3182 9.7 5fyd-a1-m1-cB_5fyd-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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