Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=68)
MSAKELRCQCVKTTSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKK
IIKKLLES

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1pfn-a1-m1-cD 68 68 1.0000 1.0000 1.0000 1.01e-44 1pfn-a1-m1-cB_1pfn-a1-m1-cD
2 1pfn-a1-m1-cC 68 68 1.0000 1.0000 1.0000 1.01e-44 1pfn-a1-m1-cB_1pfn-a1-m1-cC
3 1pfn-a1-m1-cB 68 68 1.0000 1.0000 1.0000 1.01e-44 1pfn-a1-m1-cB_1pfn-a1-m1-cC, 1pfn-a1-m1-cB_1pfn-a1-m1-cD
4 4r9w-a1-m2-cB 64 64 0.8971 0.9531 0.9531 2.20e-39 4r9w-a1-m1-cA_4r9w-a1-m2-cB, 4r9w-a1-m2-cA_4r9w-a1-m2-cB
5 4r9y-a1-m1-cD 65 64 0.8971 0.9385 0.9531 2.49e-39 4r9y-a1-m1-cB_4r9y-a1-m1-cD
6 4r9y-a1-m1-cB 65 64 0.8971 0.9385 0.9531 2.49e-39 4r9y-a1-m1-cB_4r9y-a1-m1-cD
7 1f9q-a1-m1-cC 62 62 0.8824 0.9677 0.9677 2.00e-38 1f9q-a1-m1-cB_1f9q-a1-m1-cC
8 1f9q-a1-m1-cB 62 62 0.8824 0.9677 0.9677 2.00e-38 1f9q-a1-m1-cB_1f9q-a1-m1-cC
9 4r9w-a1-m2-cA 62 62 0.8824 0.9677 0.9677 2.78e-38 4r9w-a1-m2-cA_4r9w-a1-m2-cB
10 4r9w-a1-m1-cA 62 62 0.8824 0.9677 0.9677 2.78e-38 4r9w-a1-m1-cA_4r9w-a1-m2-cB
11 4hsv-a1-m1-cD 65 64 0.8529 0.8923 0.9062 2.44e-36 4hsv-a1-m1-cA_4hsv-a1-m1-cD, 4hsv-a1-m1-cC_4hsv-a1-m1-cD
12 4hsv-a1-m1-cA 65 64 0.8529 0.8923 0.9062 2.44e-36 4hsv-a1-m1-cA_4hsv-a1-m1-cD
13 4hsv-a1-m1-cC 59 58 0.7941 0.9153 0.9310 1.13e-33 4hsv-a1-m1-cC_4hsv-a1-m1-cD
14 1plf-a1-m1-cD 65 65 0.6912 0.7231 0.7231 7.40e-29 1plf-a1-m1-cA_1plf-a1-m1-cD, 1plf-a1-m1-cB_1plf-a1-m1-cD, 1plf-a1-m1-cC_1plf-a1-m1-cD
15 1plf-a1-m1-cB 65 65 0.6912 0.7231 0.7231 7.40e-29 1plf-a1-m1-cB_1plf-a1-m1-cD
16 1plf-a1-m1-cC 63 63 0.6912 0.7460 0.7460 2.27e-28 1plf-a1-m1-cA_1plf-a1-m1-cC, 1plf-a1-m1-cC_1plf-a1-m1-cD
17 1plf-a1-m1-cA 63 63 0.6912 0.7460 0.7460 2.27e-28 1plf-a1-m1-cA_1plf-a1-m1-cC, 1plf-a1-m1-cA_1plf-a1-m1-cD
18 1tvx-a1-m1-cD 71 62 0.5588 0.5352 0.6129 3.24e-21 1tvx-a1-m1-cB_1tvx-a1-m1-cD, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
19 1tvx-a1-m1-cB 71 62 0.5588 0.5352 0.6129 3.24e-21 1tvx-a1-m1-cB_1tvx-a1-m1-cD
20 1rod-a1-m1-cB 72 68 0.5294 0.5000 0.5294 1.35e-20 1rod-a1-m1-cA_1rod-a1-m1-cB
21 1rod-a1-m1-cA 72 68 0.5294 0.5000 0.5294 1.35e-20 1rod-a1-m1-cA_1rod-a1-m1-cB
22 1msh-a1-m1-cB 72 66 0.5147 0.4861 0.5303 1.82e-20 1msh-a1-m1-cA_1msh-a1-m1-cB
23 1msh-a1-m1-cA 72 66 0.5147 0.4861 0.5303 1.82e-20 1msh-a1-m1-cA_1msh-a1-m1-cB
24 1tvx-a1-m1-cC 64 61 0.5441 0.5781 0.6066 2.80e-20 1tvx-a1-m1-cA_1tvx-a1-m1-cC, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
25 1tvx-a1-m1-cA 64 61 0.5441 0.5781 0.6066 2.80e-20 1tvx-a1-m1-cA_1tvx-a1-m1-cC
26 1mi2-a1-m1-cB 73 65 0.5294 0.4932 0.5538 5.71e-20 1mi2-a1-m1-cA_1mi2-a1-m1-cB
27 1mi2-a1-m1-cA 73 65 0.5294 0.4932 0.5538 5.71e-20 1mi2-a1-m1-cA_1mi2-a1-m1-cB
28 3n52-a3-m1-cD 70 65 0.5294 0.5143 0.5538 5.83e-20 3n52-a3-m1-cC_3n52-a3-m1-cD, 3n52-a3-m1-cD_3n52-a3-m1-cB
29 3n52-a3-m1-cB 71 65 0.5294 0.5070 0.5538 5.86e-20 3n52-a3-m1-cD_3n52-a3-m1-cB
30 2mgs-a1-m1-cB 71 65 0.4559 0.4366 0.4769 6.46e-20 2mgs-a1-m1-cA_2mgs-a1-m1-cB
31 2mgs-a1-m1-cA 71 65 0.4559 0.4366 0.4769 6.46e-20 2mgs-a1-m1-cA_2mgs-a1-m1-cB
32 3n52-a3-m1-cC 67 63 0.5147 0.5224 0.5556 2.62e-19 3n52-a3-m1-cC_3n52-a3-m1-cD
33 6wzj-a1-m1-cE 63 63 0.4706 0.5079 0.5079 2.62e-18 6wzj-a1-m1-cF_6wzj-a1-m1-cE
34 6wzk-a1-m1-cF 64 63 0.4559 0.4844 0.4921 2.48e-17 6wzk-a1-m1-cE_6wzk-a1-m1-cF
35 6wzk-a1-m1-cE 64 63 0.4559 0.4844 0.4921 2.48e-17 6wzk-a1-m1-cE_6wzk-a1-m1-cF
36 6wzj-a1-m1-cF 59 62 0.4706 0.5424 0.5161 1.08e-15 6wzj-a1-m1-cF_6wzj-a1-m1-cE
37 1qe6-a3-m1-cD 72 66 0.4118 0.3889 0.4242 1.80e-14 1qe6-a3-m2-cB_1qe6-a3-m1-cD
38 1qe6-a3-m2-cB 71 65 0.3971 0.3803 0.4154 7.28e-14 1qe6-a3-m2-cA_1qe6-a3-m2-cB, 1qe6-a3-m2-cB_1qe6-a3-m1-cD
39 1qe6-a3-m2-cA 68 61 0.3529 0.3529 0.3934 5.11e-12 1qe6-a3-m2-cA_1qe6-a3-m2-cB
40 1o7y-a1-m1-cA 67 63 0.3382 0.3433 0.3651 5.10e-08 1o7y-a1-m1-cC_1o7y-a1-m1-cA
41 1o7y-a1-m1-cC 63 60 0.3382 0.3651 0.3833 7.97e-08 1o7y-a1-m1-cB_1o7y-a1-m1-cC, 1o7y-a1-m1-cC_1o7y-a1-m1-cA, 1o7y-a1-m1-cD_1o7y-a1-m1-cC
42 1o7y-a1-m1-cD 62 59 0.3382 0.3710 0.3898 1.13e-07 1o7y-a1-m1-cD_1o7y-a1-m1-cC
43 1o7y-a1-m1-cB 62 58 0.3235 0.3548 0.3793 7.62e-07 1o7y-a1-m1-cB_1o7y-a1-m1-cC
44 2r3z-a1-m1-cA 68 65 0.3382 0.3382 0.3538 6.22e-06 2r3z-a1-m1-cB_2r3z-a1-m1-cA, 2r3z-a1-m1-cD_2r3z-a1-m1-cA
45 2r3z-a1-m1-cD 64 63 0.3382 0.3594 0.3651 6.51e-06 2r3z-a1-m1-cD_2r3z-a1-m1-cA
46 2r3z-a1-m1-cB 67 63 0.3382 0.3433 0.3651 8.17e-06 2r3z-a1-m1-cB_2r3z-a1-m1-cA
47 4mhe-a2-m1-cB 69 64 0.3088 0.3043 0.3281 0.023 4mhe-a2-m1-cC_4mhe-a2-m1-cB
48 4mhe-a2-m1-cC 61 62 0.3088 0.3443 0.3387 0.030 4mhe-a2-m1-cC_4mhe-a2-m1-cB
49 3hp3-a3-m1-cD 64 62 0.2647 0.2812 0.2903 0.37 3hp3-a3-m1-cD_3hp3-a3-m1-cF
50 3hp3-a3-m1-cF 65 62 0.2647 0.2769 0.2903 0.42 3hp3-a3-m1-cD_3hp3-a3-m1-cF
51 4uai-a1-m1-cA 68 62 0.2647 0.2647 0.2903 0.42 4uai-a1-m1-cB_4uai-a1-m1-cA
52 4uai-a1-m1-cB 67 62 0.2647 0.2687 0.2903 0.43 4uai-a1-m1-cB_4uai-a1-m1-cA
53 2boy-a4-m1-cD 251 21 0.1471 0.0398 0.4762 4.9 2boy-a4-m1-cH_2boy-a4-m1-cD
54 4xc6-a1-m1-cB 1061 25 0.1618 0.0104 0.4400 5.7 4xc6-a1-m1-cB_4xc6-a1-m1-cA
55 4xc6-a1-m1-cA 1067 25 0.1618 0.0103 0.4400 5.7 4xc6-a1-m1-cB_4xc6-a1-m1-cA
56 2z3z-a1-m2-cA 651 51 0.2059 0.0215 0.2745 6.2 2z3z-a1-m1-cA_2z3z-a1-m2-cA
57 2z3z-a1-m1-cA 651 51 0.2059 0.0215 0.2745 6.2 2z3z-a1-m1-cA_2z3z-a1-m2-cA
58 3o1q-a1-m2-cA 210 45 0.2500 0.0810 0.3778 8.4 3o1q-a1-m1-cA_3o1q-a1-m2-cA
59 3o1q-a1-m1-cA 210 45 0.2500 0.0810 0.3778 8.4 3o1q-a1-m1-cA_3o1q-a1-m2-cA

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600