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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
MSISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENAR
RLMEAVARDKAGHSAFTKSVDELR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3d55-a4-m1-cC 86 84 1.0000 0.9767 1.0000 2.68e-58 3d55-a4-m1-cA_3d55-a4-m1-cC, 3d55-a4-m2-cB_3d55-a4-m1-cC
2 3cto-a5-m5-cC 86 84 1.0000 0.9767 1.0000 2.68e-58 3cto-a5-m1-cD_3cto-a5-m5-cC
3 3d55-a4-m2-cB 84 84 1.0000 1.0000 1.0000 2.78e-58 3d55-a4-m2-cB_3d55-a4-m1-cC
4 3oei-a3-m1-cJ 86 83 0.9881 0.9651 1.0000 2.09e-57 3oei-a3-m1-cI_3oei-a3-m1-cJ
5 3cto-a7-m1-cB 83 83 0.9881 1.0000 1.0000 2.48e-57 3cto-a7-m1-cA_3cto-a7-m1-cB
6 3cto-a6-m1-cB 83 83 0.9881 1.0000 1.0000 2.48e-57 3cto-a6-m5-cA_3cto-a6-m1-cB
7 3oei-a3-m1-cI 83 83 0.9405 0.9518 0.9518 1.60e-51 3oei-a3-m1-cI_3oei-a3-m1-cJ
8 3d55-a4-m1-cA 68 68 0.8095 1.0000 1.0000 2.09e-45 3d55-a4-m1-cA_3d55-a4-m1-cC
9 3cto-a7-m1-cA 68 68 0.8095 1.0000 1.0000 2.09e-45 3cto-a7-m1-cA_3cto-a7-m1-cB, 3cto-a7-m1-cD_3cto-a7-m1-cA
10 3cto-a6-m5-cA 68 68 0.8095 1.0000 1.0000 2.09e-45 3cto-a6-m5-cA_3cto-a6-m1-cB
11 3cto-a7-m1-cD 65 65 0.7738 1.0000 1.0000 2.82e-43 3cto-a7-m1-cD_3cto-a7-m1-cA
12 3cto-a5-m1-cD 65 65 0.7738 1.0000 1.0000 2.82e-43 3cto-a5-m1-cD_3cto-a5-m5-cC
13 2a6q-a3-m1-cC 86 72 0.4286 0.4186 0.5000 1.60e-17 2a6q-a3-m1-cD_2a6q-a3-m1-cC
14 2a6q-a3-m1-cA 86 72 0.4286 0.4186 0.5000 1.60e-17 2a6q-a3-m1-cD_2a6q-a3-m1-cA
15 6l8e-a1-m1-cA 83 77 0.3571 0.3614 0.3896 3.15e-10 6l8e-a1-m1-cB_6l8e-a1-m1-cA
16 2a6q-a3-m1-cD 58 53 0.2976 0.4310 0.4717 3.39e-09 2a6q-a3-m1-cB_2a6q-a3-m1-cD, 2a6q-a3-m1-cD_2a6q-a3-m1-cA, 2a6q-a3-m1-cD_2a6q-a3-m1-cC
17 2a6q-a3-m1-cB 58 53 0.2976 0.4310 0.4717 3.39e-09 2a6q-a3-m1-cB_2a6q-a3-m1-cD
18 7v6w-a2-m1-cI 56 51 0.2143 0.3214 0.3529 1.37e-07 7v6w-a2-m1-cI_7v6w-a2-m1-cJ, 7v6w-a2-m1-cI_7v6w-a2-m1-cK
19 7v6w-a2-m1-cK 58 51 0.2143 0.3103 0.3529 1.39e-07 7v6w-a2-m1-cI_7v6w-a2-m1-cK
20 7v6w-a2-m1-cJ 85 51 0.2143 0.2118 0.3529 4.06e-07 7v6w-a2-m1-cI_7v6w-a2-m1-cJ
21 6l8e-a2-m1-cJ 59 53 0.2619 0.3729 0.4151 3.77e-06 6l8e-a2-m1-cL_6l8e-a2-m1-cJ
22 6l8e-a1-m1-cB 54 48 0.2500 0.3889 0.4375 2.96e-05 6l8e-a1-m1-cB_6l8e-a1-m1-cA
23 6l8e-a2-m1-cL 57 48 0.2500 0.3684 0.4375 3.92e-05 6l8e-a2-m1-cL_6l8e-a2-m1-cJ
24 3g5o-a1-m1-cD 92 80 0.2976 0.2717 0.3125 0.004 3g5o-a1-m1-cA_3g5o-a1-m1-cD
25 3g5o-a1-m1-cA 92 80 0.2976 0.2717 0.3125 0.004 3g5o-a1-m1-cA_3g5o-a1-m1-cD
26 1lam-a1-m6-cA 484 48 0.2024 0.0351 0.3542 0.75 1lam-a1-m2-cA_1lam-a1-m6-cA, 1lam-a1-m3-cA_1lam-a1-m6-cA, 1lam-a1-m5-cA_1lam-a1-m6-cA
27 1lam-a1-m5-cA 484 48 0.2024 0.0351 0.3542 0.75 1lam-a1-m5-cA_1lam-a1-m6-cA
28 1lam-a1-m3-cA 484 48 0.2024 0.0351 0.3542 0.75 1lam-a1-m3-cA_1lam-a1-m6-cA
29 1lam-a1-m2-cA 484 48 0.2024 0.0351 0.3542 0.75 1lam-a1-m2-cA_1lam-a1-m6-cA
30 8bd7-a1-m1-cK 619 49 0.2024 0.0275 0.3469 3.5 8bd7-a1-m1-cC_8bd7-a1-m1-cK
31 8bd7-a1-m1-cC 619 49 0.2024 0.0275 0.3469 3.5 8bd7-a1-m1-cC_8bd7-a1-m1-cK

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Reference:
Jacob Schwartz et al.

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