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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
MSPFKKTYVLKLYVAGNTPNSVRALKMLKNILEQEFQGVYALKVIDVLKNPQLAEEDKIL
ATPTLAKILPPPVRKIIGDLSDREKVLIGLDLLYDEIR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1wwj-a1-m1-cD 98 98 1.0000 1.0000 1.0000 4.66e-66 1wwj-a1-m1-cC_1wwj-a1-m1-cD, 1wwj-a1-m1-cD_1wwj-a1-m1-cA
2 1wwj-a1-m1-cC 98 98 1.0000 1.0000 1.0000 4.66e-66 1wwj-a1-m1-cC_1wwj-a1-m1-cA, 1wwj-a1-m1-cC_1wwj-a1-m1-cD
3 1wwj-a1-m1-cA 99 98 1.0000 0.9899 1.0000 4.97e-66 1wwj-a1-m1-cC_1wwj-a1-m1-cA, 1wwj-a1-m1-cD_1wwj-a1-m1-cA
4 1r5p-a2-m2-cB 93 92 0.8776 0.9247 0.9348 6.26e-58 1r5p-a2-m2-cA_1r5p-a2-m2-cB
5 1r5p-a2-m2-cA 90 90 0.8673 0.9444 0.9444 6.05e-57 1r5p-a2-m1-cA_1r5p-a2-m2-cA, 1r5p-a2-m2-cA_1r5p-a2-m2-cB
6 1r5p-a2-m1-cA 90 90 0.8673 0.9444 0.9444 6.05e-57 1r5p-a2-m1-cA_1r5p-a2-m2-cA
7 4kso-a1-m1-cD 102 98 0.8878 0.8529 0.8878 4.86e-56 4kso-a1-m1-cA_4kso-a1-m1-cD, 4kso-a1-m1-cC_4kso-a1-m1-cD
8 4kso-a1-m1-cC 102 98 0.8878 0.8529 0.8878 4.86e-56 4kso-a1-m1-cA_4kso-a1-m1-cC, 4kso-a1-m1-cC_4kso-a1-m1-cD
9 1vgl-a1-m2-cB 105 94 0.8469 0.7905 0.8830 3.12e-55 1vgl-a1-m1-cA_1vgl-a1-m2-cB
10 1vgl-a1-m1-cA 96 92 0.8469 0.8646 0.9022 4.41e-55 1vgl-a1-m1-cA_1vgl-a1-m2-cB
11 4kso-a1-m1-cA 95 90 0.8265 0.8526 0.9000 1.81e-52 4kso-a1-m1-cA_4kso-a1-m1-cC, 4kso-a1-m1-cA_4kso-a1-m1-cD
12 5jwq-a1-m3-cD 89 88 0.8061 0.8876 0.8977 1.63e-51 5jwq-a1-m3-cB_5jwq-a1-m3-cD
13 5jwq-a1-m3-cB 88 87 0.7959 0.8864 0.8966 8.97e-51 5jwq-a1-m3-cB_5jwq-a1-m3-cD
14 4kun-a1-m1-cB 88 83 0.3878 0.4318 0.4578 2.14e-16 4kun-a1-m1-cB_4kun-a1-m1-cA
15 4kun-a1-m1-cA 89 83 0.3878 0.4270 0.4578 2.34e-16 4kun-a1-m1-cB_4kun-a1-m1-cA
16 3die-a1-m1-cB 106 58 0.1735 0.1604 0.2931 3.2 3die-a1-m1-cA_3die-a1-m1-cB
17 3die-a1-m1-cA 106 58 0.1735 0.1604 0.2931 3.2 3die-a1-m1-cA_3die-a1-m1-cB
18 6mfu-a2-m1-cB 215 68 0.2143 0.0977 0.3088 4.5 6mfu-a2-m1-cB_6mfu-a2-m1-cC
19 6mfu-a2-m1-cC 216 68 0.2143 0.0972 0.3088 4.6 6mfu-a2-m1-cB_6mfu-a2-m1-cC
20 1y71-a1-m1-cB 110 46 0.1837 0.1636 0.3913 5.3 1y71-a1-m1-cA_1y71-a1-m1-cB
21 1y71-a1-m1-cA 107 45 0.1735 0.1589 0.3778 8.2 1y71-a1-m1-cA_1y71-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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