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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=86)
MTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSY
AWEIKDFLVSQDRCAEVTLEGQMYPG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3ofh-a3-m1-cA 86 86 1.0000 1.0000 1.0000 1.49e-61 3ofh-a3-m1-cB_3ofh-a3-m1-cA
2 3ofh-a3-m1-cB 79 79 0.9186 1.0000 1.0000 1.06e-55 3ofh-a3-m1-cB_3ofh-a3-m1-cA
3 3ofg-a1-m1-cA 89 90 0.3953 0.3820 0.3778 1.13e-15 3ofg-a1-m1-cB_3ofg-a1-m1-cA
4 3ofg-a1-m1-cB 85 64 0.3256 0.3294 0.4375 1.12e-13 3ofg-a1-m1-cB_3ofg-a1-m1-cA
5 5ume-a2-m1-cB 262 27 0.0930 0.0305 0.2963 2.2 5ume-a2-m1-cB_5ume-a2-m1-cF
6 5ume-a2-m1-cF 282 27 0.0930 0.0284 0.2963 2.3 5ume-a2-m1-cB_5ume-a2-m1-cF
7 3hxj-a2-m1-cD 302 38 0.1512 0.0430 0.3421 4.6 3hxj-a2-m1-cC_3hxj-a2-m1-cD
8 4u5w-a1-m1-cD 160 15 0.0930 0.0500 0.5333 4.8 4u5w-a1-m1-cD_4u5w-a1-m1-cB
9 3qb2-a7-m1-cB 165 47 0.1744 0.0909 0.3191 5.0 3qb2-a7-m2-cD_3qb2-a7-m1-cB
10 3qb2-a7-m2-cD 151 47 0.1744 0.0993 0.3191 5.0 3qb2-a7-m2-cD_3qb2-a7-m1-cB, 3qb2-a7-m2-cD_3qb2-a7-m2-cC
11 3qb2-a7-m2-cC 156 47 0.1744 0.0962 0.3191 5.2 3qb2-a7-m2-cD_3qb2-a7-m2-cC
12 2gks-a1-m1-cA 522 51 0.1977 0.0326 0.3333 6.0 2gks-a1-m1-cA_2gks-a1-m1-cB
13 2gks-a1-m1-cB 529 51 0.1977 0.0321 0.3333 6.1 2gks-a1-m1-cA_2gks-a1-m1-cB
14 2e5y-a1-m1-cB 133 51 0.1860 0.1203 0.3137 6.2 2e5y-a1-m1-cA_2e5y-a1-m1-cB
15 2e5y-a1-m1-cA 133 51 0.1860 0.1203 0.3137 6.2 2e5y-a1-m1-cA_2e5y-a1-m1-cB
16 1nfp-a1-m2-cA 228 17 0.1047 0.0395 0.5294 7.8 1nfp-a1-m1-cA_1nfp-a1-m2-cA
17 1nfp-a1-m1-cA 228 17 0.1047 0.0395 0.5294 7.8 1nfp-a1-m1-cA_1nfp-a1-m2-cA
18 7dbe-a1-m1-cA 330 28 0.0930 0.0242 0.2857 8.4 7dbe-a1-m1-cA_7dbe-a1-m1-cB, 7dbe-a1-m1-cD_7dbe-a1-m1-cA
19 7dbe-a1-m1-cD 329 28 0.0930 0.0243 0.2857 8.6 7dbe-a1-m1-cD_7dbe-a1-m1-cA
20 7dbe-a1-m1-cB 332 28 0.0930 0.0241 0.2857 8.6 7dbe-a1-m1-cA_7dbe-a1-m1-cB
21 1rso-a1-m1-cC 60 21 0.1047 0.1500 0.4286 8.7 1rso-a1-m1-cA_1rso-a1-m1-cC
22 1rso-a1-m1-cA 60 21 0.1047 0.1500 0.4286 8.7 1rso-a1-m1-cA_1rso-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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