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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=59)
MTKQEKTALNMARFIRSQTLTLLEKLNELADAADEQADICESLHDHADELYRSCLARFG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1nkd-a1-m2-cA 59 59 1.0000 1.0000 1.0000 2.41e-38 1nkd-a1-m1-cA_1nkd-a1-m2-cA
2 1nkd-a1-m1-cA 59 59 1.0000 1.0000 1.0000 2.41e-38 1nkd-a1-m1-cA_1nkd-a1-m2-cA
3 1b6q-a1-m2-cA 56 58 0.9153 0.9643 0.9310 3.09e-32 1b6q-a1-m1-cA_1b6q-a1-m2-cA
4 1b6q-a1-m1-cA 56 58 0.9153 0.9643 0.9310 3.09e-32 1b6q-a1-m1-cA_1b6q-a1-m2-cA
5 1gmg-a2-m3-cB 54 56 0.8814 0.9630 0.9286 1.41e-30 1gmg-a2-m1-cB_1gmg-a2-m3-cB
6 1gmg-a2-m1-cB 54 56 0.8814 0.9630 0.9286 1.41e-30 1gmg-a2-m1-cB_1gmg-a2-m3-cB
7 1qx8-a1-m2-cB 51 58 0.8644 1.0000 0.8793 2.00e-29 1qx8-a1-m1-cA_1qx8-a1-m2-cB, 1qx8-a1-m1-cB_1qx8-a1-m2-cB
8 1qx8-a1-m1-cB 51 58 0.8644 1.0000 0.8793 2.00e-29 1qx8-a1-m1-cB_1qx8-a1-m2-cB
9 1f4n-a2-m2-cA 59 58 0.7797 0.7797 0.7931 1.19e-26 1f4n-a2-m2-cB_1f4n-a2-m2-cA
10 1qx8-a1-m1-cA 47 54 0.7966 1.0000 0.8704 3.61e-26 1qx8-a1-m1-cA_1qx8-a1-m2-cB
11 1f4n-a2-m2-cB 50 52 0.6780 0.8000 0.7692 2.28e-21 1f4n-a2-m1-cB_1f4n-a2-m2-cB, 1f4n-a2-m2-cB_1f4n-a2-m2-cA
12 1f4n-a2-m1-cB 50 52 0.6780 0.8000 0.7692 2.28e-21 1f4n-a2-m1-cB_1f4n-a2-m2-cB
13 3ics-a1-m1-cB 538 28 0.1695 0.0186 0.3571 4.8 3ics-a1-m1-cB_3ics-a1-m1-cA
14 3ics-a1-m1-cA 539 28 0.1695 0.0186 0.3571 4.8 3ics-a1-m1-cB_3ics-a1-m1-cA
15 3rf7-a1-m2-cA 346 26 0.1864 0.0318 0.4231 8.6 3rf7-a1-m1-cA_3rf7-a1-m2-cA
16 3rf7-a1-m1-cA 346 26 0.1864 0.0318 0.4231 8.6 3rf7-a1-m1-cA_3rf7-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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