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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=56)
MTYKLILNGKTHKGVLTIEAVDAATAEKHFKQHANDLGVDGEWTYDDATKTFTVTE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6nla-a1-m2-cA 56 56 1.0000 1.0000 1.0000 8.47e-36 6nla-a1-m1-cA_6nla-a1-m2-cA
2 6nla-a1-m1-cA 56 56 1.0000 1.0000 1.0000 8.47e-36 6nla-a1-m1-cA_6nla-a1-m2-cA
3 3fil-a1-m1-cB 56 56 0.9286 0.9286 0.9286 6.78e-32 3fil-a1-m1-cA_3fil-a1-m1-cB
4 3fil-a1-m1-cA 55 54 0.9107 0.9273 0.9444 5.10e-31 3fil-a1-m1-cA_3fil-a1-m1-cB
5 2kwd-a1-m1-cE 56 56 0.8571 0.8571 0.8571 1.06e-27 2kwd-a1-m1-cA_2kwd-a1-m1-cE
6 2kwd-a1-m1-cC 56 56 0.8571 0.8571 0.8571 1.06e-27 2kwd-a1-m1-cA_2kwd-a1-m1-cC
7 2kwd-a1-m1-cA 56 56 0.8571 0.8571 0.8571 1.06e-27 2kwd-a1-m1-cA_2kwd-a1-m1-cC, 2kwd-a1-m1-cA_2kwd-a1-m1-cE
8 3mp9-a3-m2-cB 61 55 0.8571 0.7869 0.8727 1.19e-26 3mp9-a3-m1-cA_3mp9-a3-m2-cB
9 3mp9-a3-m1-cA 61 55 0.8571 0.7869 0.8727 1.19e-26 3mp9-a3-m1-cA_3mp9-a3-m2-cB
10 6f5n-a1-m1-cB 56 56 0.8036 0.8036 0.8036 3.56e-26 6f5n-a1-m1-cA_6f5n-a1-m1-cB
11 6f5n-a1-m1-cA 56 56 0.8036 0.8036 0.8036 3.56e-26 6f5n-a1-m1-cA_6f5n-a1-m1-cB
12 3v3x-a2-m1-cD 56 56 0.8214 0.8214 0.8214 1.19e-25 3v3x-a2-m1-cB_3v3x-a2-m1-cD
13 3v3x-a2-m1-cB 56 56 0.8214 0.8214 0.8214 1.19e-25 3v3x-a2-m1-cB_3v3x-a2-m1-cD
14 1q10-a1-m1-cB 56 56 0.8036 0.8036 0.8036 1.28e-24 1q10-a1-m1-cA_1q10-a1-m1-cB
15 1q10-a1-m1-cA 56 56 0.8036 0.8036 0.8036 1.28e-24 1q10-a1-m1-cA_1q10-a1-m1-cB
16 1mpe-a1-m1-cD 56 56 0.7857 0.7857 0.7857 1.33e-23 1mpe-a1-m1-cA_1mpe-a1-m1-cD, 1mpe-a1-m1-cB_1mpe-a1-m1-cD, 1mpe-a1-m1-cC_1mpe-a1-m1-cD
17 1mpe-a1-m1-cC 56 56 0.7857 0.7857 0.7857 1.33e-23 1mpe-a1-m1-cC_1mpe-a1-m1-cD
18 1mpe-a1-m1-cB 56 56 0.7857 0.7857 0.7857 1.33e-23 1mpe-a1-m1-cB_1mpe-a1-m1-cD
19 1mpe-a1-m1-cA 56 56 0.7857 0.7857 0.7857 1.33e-23 1mpe-a1-m1-cA_1mpe-a1-m1-cD
20 4jot-a1-m3-cA 249 24 0.2500 0.0562 0.5833 0.72 4jot-a1-m2-cA_4jot-a1-m3-cA
21 4jot-a1-m2-cA 249 24 0.2500 0.0562 0.5833 0.72 4jot-a1-m2-cA_4jot-a1-m3-cA
22 5g6m-a1-m2-cA 362 44 0.2321 0.0359 0.2955 3.4 5g6m-a1-m1-cA_5g6m-a1-m2-cA
23 5g6m-a1-m1-cA 362 44 0.2321 0.0359 0.2955 3.4 5g6m-a1-m1-cA_5g6m-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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