Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=85)
MYKHTIVYDGEVDKISATVVGWGYNDGKILICDIKDYVPGQTQNLYVVGGGACEKISSIT
KEKFIMIKGNDRFDTLYKALDFINR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4cu5-a4-m3-cB 85 85 1.0000 1.0000 1.0000 1.14e-58 4cu5-a4-m1-cE_4cu5-a4-m3-cB
2 4cu5-a4-m1-cE 85 85 1.0000 1.0000 1.0000 1.14e-58 4cu5-a4-m1-cE_4cu5-a4-m3-cB
3 4cu5-a2-m1-cD 85 85 1.0000 1.0000 1.0000 1.14e-58 4cu5-a2-m1-cC_4cu5-a2-m1-cD
4 4cu5-a2-m1-cC 85 85 1.0000 1.0000 1.0000 1.14e-58 4cu5-a2-m1-cC_4cu5-a2-m1-cD
5 3sw5-a1-m1-cF 172 43 0.1765 0.0872 0.3488 0.97 3sw5-a1-m1-cB_3sw5-a1-m1-cF, 3sw5-a1-m1-cC_3sw5-a1-m1-cF, 3sw5-a1-m1-cD_3sw5-a1-m1-cF
6 3sw5-a1-m1-cD 172 43 0.1765 0.0872 0.3488 0.97 3sw5-a1-m1-cD_3sw5-a1-m1-cF
7 3sw5-a1-m1-cC 172 43 0.1765 0.0872 0.3488 0.97 3sw5-a1-m1-cC_3sw5-a1-m1-cF
8 3sw5-a1-m1-cB 172 43 0.1765 0.0872 0.3488 0.97 3sw5-a1-m1-cB_3sw5-a1-m1-cF
9 5o6u-a1-m1-cC 267 39 0.1412 0.0449 0.3077 3.0 5o6u-a1-m1-cC_5o6u-a1-m1-cE
10 3sal-a2-m7-cB 394 20 0.1176 0.0254 0.5000 6.5 3sal-a2-m7-cB_3sal-a2-m5-cB
11 3sal-a2-m5-cB 394 20 0.1176 0.0254 0.5000 6.5 3sal-a2-m7-cB_3sal-a2-m5-cB
12 7lxu-a1-m1-cV 229 71 0.2235 0.0830 0.2676 7.8 7lxu-a1-m1-cH_7lxu-a1-m1-cV
13 7lxu-a1-m1-cH 229 71 0.2235 0.0830 0.2676 7.8 7lxu-a1-m1-cH_7lxu-a1-m1-cV
14 3fz3-a1-m1-cE 388 21 0.1176 0.0258 0.4762 7.9 3fz3-a1-m1-cD_3fz3-a1-m1-cE
15 3fz3-a1-m1-cD 388 21 0.1176 0.0258 0.4762 7.9 3fz3-a1-m1-cD_3fz3-a1-m1-cE
16 3fz3-a1-m1-cA 388 21 0.1176 0.0258 0.4762 7.9 3fz3-a1-m1-cA_3fz3-a1-m1-cF
17 3fz3-a1-m1-cF 410 21 0.1176 0.0244 0.4762 7.9 3fz3-a1-m1-cA_3fz3-a1-m1-cF, 3fz3-a1-m1-cC_3fz3-a1-m1-cF
18 3fz3-a1-m1-cC 410 21 0.1176 0.0244 0.4762 7.9 3fz3-a1-m1-cC_3fz3-a1-m1-cF
19 6mux-a1-m1-cV 194 71 0.2235 0.0979 0.2676 8.2 6mux-a1-m1-cH_6mux-a1-m1-cV
20 6mux-a1-m1-cH 194 71 0.2235 0.0979 0.2676 8.2 6mux-a1-m1-cH_6mux-a1-m1-cV
21 3kzq-a3-m3-cD 206 31 0.1765 0.0728 0.4839 8.2 3kzq-a3-m1-cC_3kzq-a3-m3-cD
22 3kzq-a3-m1-cC 206 31 0.1765 0.0728 0.4839 8.2 3kzq-a3-m1-cC_3kzq-a3-m3-cD
23 5fai-a1-m2-cA 209 38 0.1412 0.0574 0.3158 8.6 5fai-a1-m1-cA_5fai-a1-m2-cA
24 5fai-a1-m1-cA 209 38 0.1412 0.0574 0.3158 8.6 5fai-a1-m1-cA_5fai-a1-m2-cA
25 4e3q-a3-m1-cD 439 18 0.1176 0.0228 0.5556 8.7 4e3q-a3-m1-cA_4e3q-a3-m1-cD
26 4e3q-a3-m1-cA 439 18 0.1176 0.0228 0.5556 8.7 4e3q-a3-m1-cA_4e3q-a3-m1-cD

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600