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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
NASKGALRSVGGVIESPRNETEHWLLETVGRQAQQAGIGPTVAIYDSADINAFATGAKDS
LVAVSTGLLHNTRDEAEAVLAHEVSHIANGDVTTLQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3cqb-a2-m2-cA 96 96 1.0000 1.0000 1.0000 5.18e-66 3cqb-a2-m1-cA_3cqb-a2-m2-cA
2 3cqb-a2-m1-cA 96 96 1.0000 1.0000 1.0000 5.18e-66 3cqb-a2-m1-cA_3cqb-a2-m2-cA
3 6gcb-a1-m1-cB 291 66 0.1979 0.0653 0.2879 0.74 6gcb-a1-m1-cB_6gcb-a1-m1-cA
4 6gcb-a1-m1-cA 293 66 0.1979 0.0648 0.2879 0.74 6gcb-a1-m1-cB_6gcb-a1-m1-cA
5 7x39-a1-m1-cA 128 36 0.1667 0.1250 0.4444 0.88 7x39-a1-m1-cB_7x39-a1-m1-cA
6 4yqz-a1-m1-cD 229 52 0.1979 0.0830 0.3654 1.8 4yqz-a1-m1-cA_4yqz-a1-m1-cD, 4yqz-a1-m1-cC_4yqz-a1-m1-cD
7 4yqz-a1-m1-cC 229 52 0.1979 0.0830 0.3654 1.8 4yqz-a1-m1-cC_4yqz-a1-m1-cD
8 4yqz-a1-m1-cA 229 52 0.1979 0.0830 0.3654 1.8 4yqz-a1-m1-cA_4yqz-a1-m1-cD
9 6ait-a1-m1-cD 416 41 0.1458 0.0337 0.3415 5.5 6ait-a1-m1-cD_6ait-a1-m1-cB, 6ait-a1-m1-cE_6ait-a1-m1-cD
10 6ait-a1-m1-cA 418 41 0.1458 0.0335 0.3415 5.5 6ait-a1-m1-cA_6ait-a1-m1-cB
11 3myr-a6-m1-cH 559 30 0.1042 0.0179 0.3333 5.6 3myr-a6-m1-cH_3myr-a6-m1-cF
12 3myr-a6-m1-cF 561 30 0.1042 0.0178 0.3333 5.6 3myr-a6-m1-cH_3myr-a6-m1-cF
13 6ait-a1-m1-cB 418 41 0.1458 0.0335 0.3415 5.8 6ait-a1-m1-cA_6ait-a1-m1-cB, 6ait-a1-m1-cD_6ait-a1-m1-cB
14 6ait-a1-m1-cE 410 41 0.1458 0.0341 0.3415 6.0 6ait-a1-m1-cE_6ait-a1-m1-cD, 6ait-a1-m1-cF_6ait-a1-m1-cE
15 6ait-a1-m1-cF 406 41 0.1458 0.0345 0.3415 6.2 6ait-a1-m1-cF_6ait-a1-m1-cE
16 8cej-a3-m3-cD 449 67 0.1979 0.0423 0.2836 6.5 8cej-a3-m1-cD_8cej-a3-m3-cD
17 8cej-a3-m1-cD 449 67 0.1979 0.0423 0.2836 6.5 8cej-a3-m1-cD_8cej-a3-m3-cD
18 3c5j-a2-m2-cB 182 25 0.1042 0.0549 0.4000 8.9 3c5j-a2-m1-cB_3c5j-a2-m2-cB
19 3c5j-a2-m1-cB 182 25 0.1042 0.0549 0.4000 8.9 3c5j-a2-m1-cB_3c5j-a2-m2-cB

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Reference:
Jacob Schwartz et al.

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