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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=79)
NDLCQECEDIVHLLTKMTKEDAFQEAIRKFLEQECDILPLKLLVPRCRQVLDVYLPLVID
YFQSQINPKAICNHVGLCP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6vyn-a3-m1-cF 79 79 1.0000 1.0000 1.0000 1.50e-53 6vyn-a3-m1-cD_6vyn-a3-m1-cF
2 6vyn-a3-m1-cD 78 78 0.9873 1.0000 1.0000 1.36e-52 6vyn-a3-m1-cD_6vyn-a3-m1-cF
3 7mbk-a1-m1-cB 82 79 0.9241 0.8902 0.9241 1.83e-50 7mbk-a1-m1-cA_7mbk-a1-m1-cB
4 7mbk-a1-m1-cA 77 77 0.8987 0.9221 0.9221 1.80e-48 7mbk-a1-m1-cA_7mbk-a1-m1-cB
5 7p4t-a1-m1-cD 80 76 0.3038 0.3000 0.3158 8.68e-11 7p4t-a1-m1-cA_7p4t-a1-m1-cD, 7p4t-a1-m1-cC_7p4t-a1-m1-cD
6 7p4t-a1-m1-cC 80 76 0.3038 0.3000 0.3158 8.68e-11 7p4t-a1-m1-cB_7p4t-a1-m1-cC, 7p4t-a1-m1-cC_7p4t-a1-m1-cD
7 7p4t-a1-m1-cB 80 76 0.3038 0.3000 0.3158 8.68e-11 7p4t-a1-m1-cB_7p4t-a1-m1-cC
8 7p4t-a1-m1-cA 80 76 0.3038 0.3000 0.3158 8.68e-11 7p4t-a1-m1-cA_7p4t-a1-m1-cD
9 5nxb-a1-m1-cD 80 76 0.3038 0.3000 0.3158 8.68e-11 5nxb-a1-m1-cC_5nxb-a1-m1-cD
10 5nxb-a1-m1-cC 80 76 0.3038 0.3000 0.3158 8.68e-11 5nxb-a1-m1-cC_5nxb-a1-m1-cD
11 2dob-a2-m2-cA 79 75 0.3165 0.3165 0.3333 1.72e-10 2dob-a2-m1-cA_2dob-a2-m2-cA
12 2dob-a2-m1-cA 79 75 0.3165 0.3165 0.3333 1.72e-10 2dob-a2-m1-cA_2dob-a2-m2-cA
13 2qyp-a1-m1-cA 78 75 0.2532 0.2564 0.2667 2.42e-05 2qyp-a1-m1-cA_2qyp-a1-m1-cB
14 2qyp-a1-m1-cB 81 75 0.2532 0.2469 0.2667 2.46e-05 2qyp-a1-m1-cA_2qyp-a1-m1-cB
15 2rb3-a2-m1-cC 79 78 0.2532 0.2532 0.2564 6.72e-05 2rb3-a2-m1-cB_2rb3-a2-m1-cC
16 2rb3-a2-m1-cB 79 78 0.2532 0.2532 0.2564 6.72e-05 2rb3-a2-m1-cB_2rb3-a2-m1-cC
17 5u85-a1-m1-cA 78 78 0.2532 0.2564 0.2564 9.81e-05 5u85-a1-m1-cB_5u85-a1-m1-cA
18 5u85-a1-m1-cB 77 78 0.2532 0.2597 0.2564 9.94e-05 5u85-a1-m1-cB_5u85-a1-m1-cA
19 3rfi-a2-m2-cA 80 33 0.1139 0.1125 0.2727 0.23 3rfi-a2-m1-cA_3rfi-a2-m2-cA
20 3rfi-a2-m2-cA 80 37 0.1266 0.1250 0.2703 8.5 3rfi-a2-m1-cA_3rfi-a2-m2-cA
21 3rfi-a2-m1-cA 80 33 0.1139 0.1125 0.2727 0.23 3rfi-a2-m1-cA_3rfi-a2-m2-cA
22 3rfi-a2-m1-cA 80 37 0.1266 0.1250 0.2703 8.5 3rfi-a2-m1-cA_3rfi-a2-m2-cA
23 6jws-a1-m1-cB 589 53 0.2152 0.0289 0.3208 0.24 6jws-a1-m1-cA_6jws-a1-m1-cB
24 6jws-a1-m1-cA 551 53 0.2152 0.0309 0.3208 0.26 6jws-a1-m1-cA_6jws-a1-m1-cB
25 5z79-a2-m1-cC 599 53 0.2278 0.0301 0.3396 2.4 5z79-a2-m1-cD_5z79-a2-m1-cC
26 5z79-a2-m1-cD 577 53 0.2278 0.0312 0.3396 2.7 5z79-a2-m1-cD_5z79-a2-m1-cC
27 5htk-a1-m1-cA 424 44 0.1772 0.0330 0.3182 3.5 5htk-a1-m1-cB_5htk-a1-m1-cA
28 5htk-a1-m1-cB 419 44 0.1772 0.0334 0.3182 3.7 5htk-a1-m1-cB_5htk-a1-m1-cA
29 5lp8-a1-m1-cB 416 48 0.1646 0.0312 0.2708 6.0 5lp8-a1-m1-cB_5lp8-a1-m1-cA
30 5lp8-a1-m1-cA 432 48 0.1646 0.0301 0.2708 6.0 5lp8-a1-m1-cB_5lp8-a1-m1-cA
31 3awd-a1-m1-cD 257 39 0.1772 0.0545 0.3590 6.2 3awd-a1-m1-cA_3awd-a1-m1-cD, 3awd-a1-m1-cB_3awd-a1-m1-cD, 3awd-a1-m1-cC_3awd-a1-m1-cD
32 3awd-a1-m1-cC 257 39 0.1772 0.0545 0.3590 6.2 3awd-a1-m1-cC_3awd-a1-m1-cD
33 3awd-a1-m1-cB 257 39 0.1772 0.0545 0.3590 6.2 3awd-a1-m1-cB_3awd-a1-m1-cD
34 3awd-a1-m1-cA 257 39 0.1772 0.0545 0.3590 6.2 3awd-a1-m1-cA_3awd-a1-m1-cD
35 4xm5-a1-m2-cA 267 55 0.2025 0.0599 0.2909 9.3 4xm5-a1-m1-cA_4xm5-a1-m2-cA
36 4xm5-a1-m1-cA 267 55 0.2025 0.0599 0.2909 9.3 4xm5-a1-m1-cA_4xm5-a1-m2-cA
37 6hjw-a1-m1-cB 245 40 0.1899 0.0612 0.3750 9.4 6hjw-a1-m1-cA_6hjw-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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