Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
NEKVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQV
DQLTNDKARVEVERDNLAEDIMRLREKL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3s4r-a1-m1-cB 91 88 1.0000 0.9670 1.0000 1.23e-55 3s4r-a1-m1-cA_3s4r-a1-m1-cB
2 3s4r-a1-m1-cA 88 88 1.0000 1.0000 1.0000 1.86e-55 3s4r-a1-m1-cA_3s4r-a1-m1-cB
3 3uf1-a2-m1-cD 108 50 0.5000 0.4074 0.8800 2.89e-20 3uf1-a2-m1-cC_3uf1-a2-m1-cD
4 3uf1-a2-m1-cC 105 50 0.5000 0.4190 0.8800 3.43e-20 3uf1-a2-m1-cC_3uf1-a2-m1-cD
5 5whf-a1-m2-cG 88 37 0.4205 0.4205 1.0000 3.80e-18 5whf-a1-m2-cD_5whf-a1-m2-cG, 5whf-a1-m2-cH_5whf-a1-m2-cG
6 5whf-a1-m2-cH 84 37 0.4205 0.4405 1.0000 3.82e-18 5whf-a1-m2-cH_5whf-a1-m2-cE, 5whf-a1-m2-cH_5whf-a1-m2-cG
7 5whf-a1-m2-cD 85 37 0.4205 0.4353 1.0000 4.19e-18 5whf-a1-m2-cD_5whf-a1-m2-cG
8 3g1e-a1-m1-cB 37 37 0.4205 1.0000 1.0000 4.28e-18 3g1e-a1-m1-cA_3g1e-a1-m1-cB
9 3g1e-a1-m1-cA 37 37 0.4205 1.0000 1.0000 4.28e-18 3g1e-a1-m1-cA_3g1e-a1-m1-cB
10 5whf-a1-m2-cE 86 37 0.4205 0.4302 1.0000 4.40e-18 5whf-a1-m2-cH_5whf-a1-m2-cE
11 4ypc-a1-m3-cA 83 29 0.3295 0.3494 1.0000 8.97e-13 4ypc-a1-m2-cA_4ypc-a1-m3-cA
12 4ypc-a1-m2-cA 83 29 0.3295 0.3494 1.0000 8.97e-13 4ypc-a1-m2-cA_4ypc-a1-m3-cA
13 6a9p-a1-m1-cH 101 46 0.2955 0.2574 0.5652 1.15e-11 6a9p-a1-m1-cH_6a9p-a1-m1-cA
14 6a9p-a2-m1-cF 100 46 0.2955 0.2600 0.5652 1.24e-11 6a9p-a2-m1-cF_6a9p-a2-m1-cE
15 6a9p-a2-m1-cC 104 46 0.2955 0.2500 0.5652 1.45e-11 6a9p-a2-m1-cE_6a9p-a2-m1-cC
16 6a9p-a2-m1-cE 102 46 0.2955 0.2549 0.5652 1.49e-11 6a9p-a2-m1-cE_6a9p-a2-m1-cC, 6a9p-a2-m1-cF_6a9p-a2-m1-cE
17 6a9p-a1-m1-cA 103 46 0.2955 0.2524 0.5652 1.50e-11 6a9p-a1-m1-cH_6a9p-a1-m1-cA
18 4yv3-a1-m1-cA 75 28 0.3068 0.3600 0.9643 2.76e-09 4yv3-a1-m1-cC_4yv3-a1-m1-cA
19 6yf5-a2-m1-cC 87 26 0.1932 0.1954 0.6538 0.006 6yf5-a2-m1-cD_6yf5-a2-m1-cC
20 6yf5-a2-m1-cD 82 26 0.1932 0.2073 0.6538 0.008 6yf5-a2-m1-cD_6yf5-a2-m1-cC
21 7n61-a1-m1-c0A 467 68 0.2386 0.0450 0.3088 0.048 7n61-a1-m1-c0A_7n61-a1-m1-c0D
22 7n61-a1-m1-c0D 476 66 0.2273 0.0420 0.3030 0.076 7n61-a1-m1-c0A_7n61-a1-m1-c0D
23 7som-a1-m1-cR 433 61 0.2159 0.0439 0.3115 0.11 7som-a1-m1-cS_7som-a1-m1-cR
24 7som-a1-m1-cS 432 61 0.2159 0.0440 0.3115 0.12 7som-a1-m1-cS_7som-a1-m1-cR
25 7n61-a1-m1-c1A 404 80 0.3068 0.0668 0.3375 0.14 7n61-a1-m1-c1A_7n61-a1-m1-c0Z
26 2o99-a2-m1-cB 171 80 0.2386 0.1228 0.2625 0.46 2o99-a2-m1-cB_2o99-a2-m1-cC
27 2o99-a2-m1-cC 174 80 0.2386 0.1207 0.2625 0.50 2o99-a2-m1-cB_2o99-a2-m1-cC
28 7n61-a1-m1-c0Z 420 72 0.2727 0.0571 0.3333 1.4 7n61-a1-m1-c1A_7n61-a1-m1-c0Z
29 6h9x-a1-m2-cA 428 62 0.2273 0.0467 0.3226 4.4 6h9x-a1-m1-cA_6h9x-a1-m2-cA
30 6h9x-a1-m1-cA 428 62 0.2273 0.0467 0.3226 4.4 6h9x-a1-m1-cA_6h9x-a1-m2-cA
31 3td3-a3-m1-cH 121 38 0.1250 0.0909 0.2895 5.3 3td3-a3-m1-cE_3td3-a3-m1-cH
32 3td3-a3-m1-cE 120 38 0.1250 0.0917 0.2895 5.5 3td3-a3-m1-cE_3td3-a3-m1-cH
33 6e2j-a2-m4-cA 107 43 0.1705 0.1402 0.3488 5.8 6e2j-a2-m1-cA_6e2j-a2-m4-cA, 6e2j-a2-m2-cA_6e2j-a2-m4-cA, 6e2j-a2-m3-cA_6e2j-a2-m4-cA
34 6e2j-a2-m3-cA 107 43 0.1705 0.1402 0.3488 5.8 6e2j-a2-m3-cA_6e2j-a2-m4-cA
35 6e2j-a2-m2-cA 107 43 0.1705 0.1402 0.3488 5.8 6e2j-a2-m2-cA_6e2j-a2-m4-cA
36 6e2j-a2-m1-cA 107 43 0.1705 0.1402 0.3488 5.8 6e2j-a2-m1-cA_6e2j-a2-m4-cA
37 4kvs-a2-m2-cA 221 32 0.1136 0.0452 0.3125 6.0 4kvs-a2-m1-cA_4kvs-a2-m2-cA
38 4kvs-a2-m1-cA 221 32 0.1136 0.0452 0.3125 6.0 4kvs-a2-m1-cA_4kvs-a2-m2-cA
39 7s0r-a1-m1-cA 82 44 0.1705 0.1829 0.3409 8.0 7s0r-a1-m1-cB_7s0r-a1-m1-cA
40 3igh-a1-m2-cX 483 62 0.1818 0.0331 0.2581 8.3 3igh-a1-m1-cX_3igh-a1-m2-cX
41 3igh-a1-m1-cX 483 62 0.1818 0.0331 0.2581 8.3 3igh-a1-m1-cX_3igh-a1-m2-cX
42 1hyu-a1-m2-cA 521 38 0.1591 0.0269 0.3684 9.7 1hyu-a1-m1-cA_1hyu-a1-m2-cA
43 1hyu-a1-m1-cA 521 38 0.1591 0.0269 0.3684 9.7 1hyu-a1-m1-cA_1hyu-a1-m2-cA

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600