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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=80)
NEQLAKQKGCMACHDLKAKKVGPAYADVAKKYAGRKDAVDYLAGKIKKGGSGVWGSVPMP
PQNVTDAEAKQLAQWILSIK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4zid-a1-m2-cA 80 80 1.0000 1.0000 1.0000 6.79e-54 4zid-a1-m1-cA_4zid-a1-m2-cA
2 4zid-a1-m1-cA 80 80 1.0000 1.0000 1.0000 6.79e-54 4zid-a1-m1-cA_4zid-a1-m2-cA
3 1ynr-a1-m1-cC 80 80 1.0000 1.0000 1.0000 6.79e-54 1ynr-a1-m1-cA_1ynr-a1-m1-cC, 1ynr-a1-m1-cD_1ynr-a1-m1-cC
4 1ynr-a1-m1-cA 80 80 1.0000 1.0000 1.0000 6.79e-54 1ynr-a1-m1-cA_1ynr-a1-m1-cC, 1ynr-a1-m1-cD_1ynr-a1-m1-cA
5 1ynr-a1-m1-cD 79 79 0.9875 1.0000 1.0000 2.46e-53 1ynr-a1-m1-cD_1ynr-a1-m1-cA, 1ynr-a1-m1-cD_1ynr-a1-m1-cC
6 5aus-a1-m1-cC 83 83 1.0000 0.9639 0.9639 1.18e-51 5aus-a1-m1-cA_5aus-a1-m1-cC
7 5aur-a2-m1-cG 83 83 1.0000 0.9639 0.9639 1.18e-51 5aur-a2-m1-cE_5aur-a2-m1-cG
8 5aur-a2-m1-cE 83 83 1.0000 0.9639 0.9639 1.18e-51 5aur-a2-m1-cE_5aur-a2-m1-cG
9 5aus-a1-m1-cA 79 80 0.9875 1.0000 0.9875 1.67e-51 5aus-a1-m1-cA_5aus-a1-m1-cC
10 3x39-a2-m3-cB 82 79 0.5625 0.5488 0.5696 1.19e-26 3x39-a2-m1-cB_3x39-a2-m3-cB
11 3x39-a2-m1-cB 82 79 0.5625 0.5488 0.5696 1.19e-26 3x39-a2-m1-cB_3x39-a2-m3-cB
12 3x15-a2-m1-cJ 87 83 0.3625 0.3333 0.3494 3.63e-07 3x15-a2-m1-cD_3x15-a2-m1-cJ
13 3x15-a2-m1-cD 87 83 0.3625 0.3333 0.3494 3.63e-07 3x15-a2-m1-cD_3x15-a2-m1-cJ
14 3x15-a1-m1-cG 87 83 0.3625 0.3333 0.3494 3.63e-07 3x15-a1-m1-cA_3x15-a1-m1-cG
15 3x15-a1-m1-cA 87 83 0.3625 0.3333 0.3494 3.63e-07 3x15-a1-m1-cA_3x15-a1-m1-cG
16 2zxy-a1-m2-cA 86 81 0.3500 0.3256 0.3457 4.31e-07 2zxy-a1-m1-cA_2zxy-a1-m2-cA
17 2zxy-a1-m1-cA 86 81 0.3500 0.3256 0.3457 4.31e-07 2zxy-a1-m1-cA_2zxy-a1-m2-cA
18 5z25-a1-m3-cA 96 43 0.2125 0.1771 0.3953 2.85e-05 5z25-a1-m2-cA_5z25-a1-m3-cA
19 5z25-a1-m2-cA 96 43 0.2125 0.1771 0.3953 2.85e-05 5z25-a1-m2-cA_5z25-a1-m3-cA
20 6h5l-a1-m6-cB 220 82 0.2500 0.0909 0.2439 0.096 6h5l-a1-m2-cB_6h5l-a1-m6-cB
21 6h5l-a1-m2-cB 220 82 0.2500 0.0909 0.2439 0.096 6h5l-a1-m2-cB_6h5l-a1-m6-cB
22 1i8o-a2-m2-cA 113 55 0.2375 0.1681 0.3455 0.14 1i8o-a2-m1-cA_1i8o-a2-m2-cA
23 1i8o-a2-m1-cA 113 55 0.2375 0.1681 0.3455 0.14 1i8o-a2-m1-cA_1i8o-a2-m2-cA
24 3vh3-a1-m2-cA 320 18 0.1250 0.0312 0.5556 2.0 3vh3-a1-m1-cA_3vh3-a1-m2-cA
25 3vh3-a1-m1-cA 320 18 0.1250 0.0312 0.5556 2.0 3vh3-a1-m1-cA_3vh3-a1-m2-cA
26 2zoo-a1-m3-cA 438 83 0.2500 0.0457 0.2410 2.0 2zoo-a1-m2-cA_2zoo-a1-m3-cA
27 2zoo-a1-m2-cA 438 83 0.2500 0.0457 0.2410 2.0 2zoo-a1-m2-cA_2zoo-a1-m3-cA
28 1o6i-a1-m1-cA 496 23 0.1375 0.0222 0.4783 7.1 1o6i-a1-m1-cA_1o6i-a1-m1-cB
29 1o6i-a1-m1-cB 497 23 0.1375 0.0221 0.4783 7.2 1o6i-a1-m1-cA_1o6i-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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