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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=79)
NEQLAKQKGCMACHDLKAKVGPAYADVAKKYAGRKDAVDYLAGKIKKGGSGVWGSVPMPP
QNVTDAEAKQLAQWILSIK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5aus-a1-m1-cA 79 79 1.0000 1.0000 1.0000 2.26e-53 5aus-a1-m1-cA_5aus-a1-m1-cC
2 4zid-a1-m2-cA 80 80 1.0000 0.9875 0.9875 1.65e-51 4zid-a1-m1-cA_4zid-a1-m2-cA
3 4zid-a1-m1-cA 80 80 1.0000 0.9875 0.9875 1.65e-51 4zid-a1-m1-cA_4zid-a1-m2-cA
4 1ynr-a1-m1-cC 80 80 1.0000 0.9875 0.9875 1.65e-51 1ynr-a1-m1-cA_1ynr-a1-m1-cC, 1ynr-a1-m1-cD_1ynr-a1-m1-cC
5 1ynr-a1-m1-cA 80 80 1.0000 0.9875 0.9875 1.65e-51 1ynr-a1-m1-cA_1ynr-a1-m1-cC, 1ynr-a1-m1-cD_1ynr-a1-m1-cA
6 1ynr-a1-m1-cD 79 79 0.9873 0.9873 0.9873 5.66e-51 1ynr-a1-m1-cD_1ynr-a1-m1-cA, 1ynr-a1-m1-cD_1ynr-a1-m1-cC
7 5aus-a1-m1-cC 83 83 1.0000 0.9518 0.9518 6.51e-51 5aus-a1-m1-cA_5aus-a1-m1-cC
8 5aur-a2-m1-cG 83 83 1.0000 0.9518 0.9518 6.51e-51 5aur-a2-m1-cE_5aur-a2-m1-cG
9 5aur-a2-m1-cE 83 83 1.0000 0.9518 0.9518 6.51e-51 5aur-a2-m1-cE_5aur-a2-m1-cG
10 3x39-a2-m3-cB 82 79 0.5696 0.5488 0.5696 5.09e-25 3x39-a2-m1-cB_3x39-a2-m3-cB
11 3x39-a2-m1-cB 82 79 0.5696 0.5488 0.5696 5.09e-25 3x39-a2-m1-cB_3x39-a2-m3-cB
12 3x15-a2-m1-cJ 87 83 0.3671 0.3333 0.3494 1.37e-05 3x15-a2-m1-cD_3x15-a2-m1-cJ
13 3x15-a2-m1-cD 87 83 0.3671 0.3333 0.3494 1.37e-05 3x15-a2-m1-cD_3x15-a2-m1-cJ
14 3x15-a1-m1-cG 87 83 0.3671 0.3333 0.3494 1.37e-05 3x15-a1-m1-cA_3x15-a1-m1-cG
15 3x15-a1-m1-cA 87 83 0.3671 0.3333 0.3494 1.37e-05 3x15-a1-m1-cA_3x15-a1-m1-cG
16 2zxy-a1-m2-cA 86 81 0.3544 0.3256 0.3457 1.74e-05 2zxy-a1-m1-cA_2zxy-a1-m2-cA
17 2zxy-a1-m1-cA 86 81 0.3544 0.3256 0.3457 1.74e-05 2zxy-a1-m1-cA_2zxy-a1-m2-cA
18 5z25-a1-m3-cA 96 43 0.2152 0.1771 0.3953 0.001 5z25-a1-m2-cA_5z25-a1-m3-cA
19 5z25-a1-m2-cA 96 43 0.2152 0.1771 0.3953 0.001 5z25-a1-m2-cA_5z25-a1-m3-cA
20 3vh3-a1-m2-cA 320 18 0.1266 0.0312 0.5556 1.9 3vh3-a1-m1-cA_3vh3-a1-m2-cA
21 3vh3-a1-m1-cA 320 18 0.1266 0.0312 0.5556 1.9 3vh3-a1-m1-cA_3vh3-a1-m2-cA
22 6tp9-a6-m1-cH 79 52 0.2025 0.2025 0.3077 3.0 6tp9-a6-m1-cH_6tp9-a6-m1-cI
23 3lxf-a1-m2-cE 104 36 0.1519 0.1154 0.3333 3.5 3lxf-a1-m1-cC_3lxf-a1-m2-cE, 3lxf-a1-m1-cE_3lxf-a1-m2-cE, 3lxf-a1-m2-cD_3lxf-a1-m2-cE
24 3lxf-a1-m2-cD 104 36 0.1519 0.1154 0.3333 3.5 3lxf-a1-m2-cD_3lxf-a1-m2-cE
25 3lxf-a1-m1-cE 104 36 0.1519 0.1154 0.3333 3.5 3lxf-a1-m1-cE_3lxf-a1-m2-cE
26 3lxf-a1-m1-cC 104 36 0.1519 0.1154 0.3333 3.5 3lxf-a1-m1-cC_3lxf-a1-m2-cE
27 1o6i-a1-m1-cA 496 23 0.1392 0.0222 0.4783 6.9 1o6i-a1-m1-cA_1o6i-a1-m1-cB
28 1o6i-a1-m1-cB 497 23 0.1392 0.0221 0.4783 6.9 1o6i-a1-m1-cA_1o6i-a1-m1-cB
29 3o5c-a2-m1-cC 304 21 0.1392 0.0362 0.5238 7.5 3o5c-a2-m1-cC_3o5c-a2-m1-cD
30 3o5c-a2-m1-cD 307 21 0.1392 0.0358 0.5238 8.2 3o5c-a2-m1-cC_3o5c-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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