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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=60)
NERVEKIIQDLLDVLVKEEVTPDLALCLGNAVTNIIAQVPESKRVAVVDNFTKALKQSVL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2ota-a1-m1-cA 66 60 1.0000 0.9091 1.0000 2.42e-37 2ota-a1-m1-cB_2ota-a1-m1-cA
2 2ota-a1-m1-cB 60 60 1.0000 1.0000 1.0000 6.68e-37 2ota-a1-m1-cB_2ota-a1-m1-cA
3 2qti-a1-m2-cA 66 60 0.4667 0.4242 0.4667 2.21e-10 2qti-a1-m1-cA_2qti-a1-m2-cA
4 2qti-a1-m1-cA 66 60 0.4667 0.4242 0.4667 2.21e-10 2qti-a1-m1-cA_2qti-a1-m2-cA
5 2jpq-a1-m1-cB 83 61 0.3833 0.2771 0.3770 2.54e-05 2jpq-a1-m1-cA_2jpq-a1-m1-cB
6 2jpq-a1-m1-cA 83 61 0.3833 0.2771 0.3770 2.54e-05 2jpq-a1-m1-cA_2jpq-a1-m1-cB
7 6oap-a1-m1-cA 305 51 0.2500 0.0492 0.2941 4.3 6oap-a1-m1-cB_6oap-a1-m1-cA
8 6tdu-a1-m1-ch 460 53 0.2833 0.0370 0.3208 6.1 6tdu-a1-m1-cH_6tdu-a1-m1-ch
9 6tdu-a1-m1-cH 460 53 0.2833 0.0370 0.3208 6.1 6tdu-a1-m1-cH_6tdu-a1-m1-ch

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Reference:
Jacob Schwartz et al.

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