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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=67)
NHKVHHHHHHMSDDDDKGIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLI
IEPVRKE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2mrn-a1-m1-cB 67 67 1.0000 1.0000 1.0000 1.63e-43 2mrn-a1-m1-cA_2mrn-a1-m1-cB
2 2mrn-a1-m1-cA 67 67 1.0000 1.0000 1.0000 1.63e-43 2mrn-a1-m1-cA_2mrn-a1-m1-cB
3 1ub4-a1-m2-cC 75 49 0.7313 0.6533 1.0000 1.19e-29 1ub4-a1-m1-cC_1ub4-a1-m2-cC
4 1ub4-a1-m1-cC 75 49 0.7313 0.6533 1.0000 1.19e-29 1ub4-a1-m1-cC_1ub4-a1-m2-cC
5 3l8u-a1-m1-cB 153 67 0.2388 0.1046 0.2388 0.37 3l8u-a1-m1-cB_3l8u-a1-m1-cA
6 3l8u-a1-m1-cA 154 67 0.2388 0.1039 0.2388 0.39 3l8u-a1-m1-cB_3l8u-a1-m1-cA
7 2q8u-a3-m1-cA 303 65 0.2985 0.0660 0.3077 2.4 2q8u-a3-m1-cB_2q8u-a3-m1-cA
8 3u1k-a2-m1-cD 614 18 0.1194 0.0130 0.4444 2.7 3u1k-a2-m1-cD_3u1k-a2-m1-cB
9 3u1k-a2-m1-cB 617 18 0.1194 0.0130 0.4444 2.7 3u1k-a2-m1-cD_3u1k-a2-m1-cB
10 3u1k-a1-m3-cA 619 18 0.1194 0.0129 0.4444 2.7 3u1k-a1-m2-cA_3u1k-a1-m3-cA
11 3u1k-a1-m2-cA 619 18 0.1194 0.0129 0.4444 2.7 3u1k-a1-m2-cA_3u1k-a1-m3-cA
12 5zf6-a1-m1-cB 548 18 0.1194 0.0146 0.4444 2.8 5zf6-a1-m1-cB_5zf6-a1-m1-cA
13 5zf6-a1-m1-cA 560 18 0.1194 0.0143 0.4444 2.9 5zf6-a1-m1-cB_5zf6-a1-m1-cA
14 3t32-a1-m1-cB 353 26 0.1791 0.0340 0.4615 4.3 3t32-a1-m1-cA_3t32-a1-m1-cB
15 3t32-a1-m1-cA 353 26 0.1791 0.0340 0.4615 4.3 3t32-a1-m1-cA_3t32-a1-m1-cB
16 7jw1-a1-m9-cd 307 14 0.1493 0.0326 0.7143 6.8 7jw1-a1-m9-cd_7jw1-a1-m5-cB, 7jw1-a1-m9-cd_7jw1-a1-m9-cB
17 7jw1-a1-m7-cD 307 14 0.1493 0.0326 0.7143 6.8 7jw1-a1-m9-ca_7jw1-a1-m7-cD
18 7jw1-a1-m9-cB 327 14 0.1493 0.0306 0.7143 7.1 7jw1-a1-m9-cd_7jw1-a1-m9-cB
19 7jw1-a1-m5-cB 327 14 0.1493 0.0306 0.7143 7.1 7jw1-a1-m9-cd_7jw1-a1-m5-cB

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Reference:
Jacob Schwartz et al.

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