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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=79)
NKAQIEIYYCRQCNWLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQ
EGGFPEAKVLKQRVRDLID

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2p0g-a1-m1-cC 79 79 1.0000 1.0000 1.0000 7.15e-56 2p0g-a1-m1-cC_2p0g-a1-m1-cD
2 2p0g-a1-m1-cD 79 78 0.9873 0.9873 1.0000 7.26e-55 2p0g-a1-m1-cA_2p0g-a1-m1-cD, 2p0g-a1-m1-cC_2p0g-a1-m1-cD
3 2p0g-a1-m1-cA 77 77 0.9747 1.0000 1.0000 4.78e-54 2p0g-a1-m1-cA_2p0g-a1-m1-cD
4 2obk-a2-m1-cE 80 79 0.6709 0.6625 0.6709 2.02e-34 2obk-a2-m1-cE_2obk-a2-m1-cH
5 2obk-a2-m1-cH 83 79 0.6709 0.6386 0.6709 2.37e-34 2obk-a2-m1-cE_2obk-a2-m1-cH
6 2obk-a1-m1-cB 85 79 0.6709 0.6235 0.6709 2.68e-34 2obk-a1-m1-cA_2obk-a1-m1-cB
7 2obk-a1-m1-cA 84 79 0.6709 0.6310 0.6709 2.82e-34 2obk-a1-m1-cA_2obk-a1-m1-cB
8 2oka-a1-m1-cD 84 79 0.6456 0.6071 0.6456 5.45e-33 2oka-a1-m1-cA_2oka-a1-m1-cD, 2oka-a1-m1-cC_2oka-a1-m1-cD
9 2oka-a1-m1-cC 84 79 0.6456 0.6071 0.6456 5.45e-33 2oka-a1-m1-cC_2oka-a1-m1-cD
10 2oka-a1-m1-cA 84 79 0.6456 0.6071 0.6456 5.45e-33 2oka-a1-m1-cA_2oka-a1-m1-cD
11 2fa8-a1-m1-cC 80 79 0.5823 0.5750 0.5823 2.92e-28 2fa8-a1-m1-cC_2fa8-a1-m1-cB, 2fa8-a1-m1-cC_2fa8-a1-m1-cD
12 2fa8-a1-m1-cB 86 79 0.5823 0.5349 0.5823 3.93e-28 2fa8-a1-m1-cC_2fa8-a1-m1-cB
13 2fa8-a1-m1-cD 80 78 0.5696 0.5625 0.5769 1.96e-27 2fa8-a1-m1-cC_2fa8-a1-m1-cD
14 2ojl-a1-m2-cA 78 77 0.5696 0.5769 0.5844 3.79e-25 2ojl-a1-m2-cB_2ojl-a1-m2-cA
15 2ojl-a1-m1-cA 78 77 0.5696 0.5769 0.5844 3.79e-25 2ojl-a1-m2-cB_2ojl-a1-m1-cA
16 2ojl-a1-m2-cB 76 74 0.5696 0.5921 0.6081 4.52e-25 2ojl-a1-m2-cB_2ojl-a1-m1-cA, 2ojl-a1-m2-cB_2ojl-a1-m2-cA
17 3dex-a4-m1-cG 77 76 0.4557 0.4675 0.4737 5.97e-19 3dex-a4-m1-cG_3dex-a4-m1-cH
18 3dex-a4-m1-cH 83 76 0.4557 0.4337 0.4737 6.68e-19 3dex-a4-m1-cG_3dex-a4-m1-cH
19 8cwp-a1-m2-cA 327 53 0.2278 0.0550 0.3396 0.14 8cwp-a1-m1-cA_8cwp-a1-m2-cA
20 8cwp-a1-m1-cA 327 53 0.2278 0.0550 0.3396 0.14 8cwp-a1-m1-cA_8cwp-a1-m2-cA
21 1t8q-a1-m1-cD 318 47 0.2405 0.0597 0.4043 0.15 1t8q-a1-m1-cD_1t8q-a1-m1-cA
22 1t8q-a1-m1-cA 319 47 0.2405 0.0596 0.4043 0.15 1t8q-a1-m1-cD_1t8q-a1-m1-cA
23 5tgt-a1-m1-cB 453 35 0.1139 0.0199 0.2571 1.1 5tgt-a1-m1-cB_5tgt-a1-m1-cA
24 5tgt-a1-m1-cA 461 35 0.1139 0.0195 0.2571 1.1 5tgt-a1-m1-cB_5tgt-a1-m1-cA
25 7wgr-a1-m1-cB 850 89 0.2405 0.0224 0.2135 2.7 7wgr-a1-m1-cA_7wgr-a1-m1-cB
26 7wgr-a1-m1-cA 850 89 0.2405 0.0224 0.2135 2.7 7wgr-a1-m1-cA_7wgr-a1-m1-cB
27 5dyk-a2-m2-cA 809 51 0.2278 0.0222 0.3529 4.2 5dyk-a2-m1-cA_5dyk-a2-m2-cA
28 5dyk-a2-m1-cA 809 51 0.2278 0.0222 0.3529 4.2 5dyk-a2-m1-cA_5dyk-a2-m2-cA
29 3nib-a1-m2-cA 238 25 0.1392 0.0462 0.4400 4.7 3nib-a1-m1-cA_3nib-a1-m2-cA
30 3nib-a1-m1-cA 238 25 0.1392 0.0462 0.4400 4.7 3nib-a1-m1-cA_3nib-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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