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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
NKKTQLLEVIAALPEELVDQALNYVQLQNPIQITPGVCGGQARIRNTRIPVWTLVAYRQQ
GAPDKELLANYPGLTAEDLSAAWHYYEQNPEQIDREIAQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2ga1-a1-m1-cB 99 99 1.0000 1.0000 1.0000 4.07e-69 2ga1-a1-m1-cB_2ga1-a1-m1-cA
2 2ga1-a1-m1-cA 100 99 1.0000 0.9900 1.0000 4.69e-69 2ga1-a1-m1-cB_2ga1-a1-m1-cA
3 4zr8-a1-m1-cA 353 58 0.1717 0.0482 0.2931 1.6 4zr8-a1-m1-cA_4zr8-a1-m1-cB
4 4zr8-a1-m1-cB 354 58 0.1717 0.0480 0.2931 1.6 4zr8-a1-m1-cA_4zr8-a1-m1-cB
5 1k1y-a3-m1-cA 636 15 0.1010 0.0157 0.6667 3.6 1k1y-a3-m1-cA_1k1y-a3-m1-cB
6 1s4d-a4-m1-cH 259 33 0.1212 0.0463 0.3636 3.9 1s4d-a4-m1-cH_1s4d-a4-m1-cI
7 1s4d-a4-m1-cI 263 33 0.1212 0.0456 0.3636 4.0 1s4d-a4-m1-cH_1s4d-a4-m1-cI
8 5uvn-a1-m1-cF 416 29 0.1616 0.0385 0.5517 4.1 5uvn-a1-m1-cE_5uvn-a1-m1-cF
9 5uvn-a1-m1-cE 416 29 0.1616 0.0385 0.5517 4.1 5uvn-a1-m1-cE_5uvn-a1-m1-cF
10 5nz8-a1-m1-cA 884 39 0.1212 0.0136 0.3077 9.8 5nz8-a1-m1-cA_5nz8-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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