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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
NKLYKNIEIDTDTHSVYIHENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMNHCMNSD
ALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLDN

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5x5l-a1-m1-cE 98 98 1.0000 1.0000 1.0000 2.81e-69 5x5l-a1-m1-cA_5x5l-a1-m1-cE
2 5x5l-a1-m1-cA 95 97 0.9592 0.9895 0.9691 4.31e-64 5x5l-a1-m1-cA_5x5l-a1-m1-cE
3 7e1f-a1-m1-cA 95 94 0.3776 0.3895 0.3936 3.11e-11 7e1f-a1-m1-cB_7e1f-a1-m1-cA
4 7e1f-a1-m1-cB 93 94 0.3776 0.3978 0.3936 3.17e-11 7e1f-a1-m1-cB_7e1f-a1-m1-cA
5 7e1b-a2-m1-cH 208 94 0.3673 0.1731 0.3830 8.54e-11 7e1b-a2-m1-cF_7e1b-a2-m1-cH, 7e1b-a2-m1-cH_7e1b-a2-m1-cE
6 7e1b-a2-m1-cF 208 94 0.3673 0.1731 0.3830 8.54e-11 7e1b-a2-m1-cF_7e1b-a2-m1-cH
7 7e1b-a1-m1-cD 208 94 0.3673 0.1731 0.3830 8.72e-11 7e1b-a1-m1-cD_7e1b-a1-m1-cC
8 7e1b-a1-m1-cC 209 94 0.3673 0.1722 0.3830 9.38e-11 7e1b-a1-m1-cD_7e1b-a1-m1-cC
9 7e1b-a2-m1-cE 209 94 0.3673 0.1722 0.3830 1.03e-10 7e1b-a2-m1-cH_7e1b-a2-m1-cE
10 4b09-a1-m1-cB 214 76 0.3061 0.1402 0.3947 1.06e-10 4b09-a1-m1-cB_4b09-a1-m1-cA
11 4b09-a1-m1-cA 216 76 0.3061 0.1389 0.3947 1.19e-10 4b09-a1-m1-cB_4b09-a1-m1-cA
12 2oqr-a1-m2-cA 226 94 0.2755 0.1195 0.2872 6.62e-09 2oqr-a1-m1-cA_2oqr-a1-m2-cA
13 2oqr-a1-m1-cA 226 94 0.2755 0.1195 0.2872 6.62e-09 2oqr-a1-m1-cA_2oqr-a1-m2-cA
14 3q9v-a1-m2-cB 99 73 0.2653 0.2626 0.3562 1.24e-08 3q9v-a1-m1-cA_3q9v-a1-m2-cB
15 3q9v-a1-m1-cA 98 73 0.2653 0.2653 0.3562 1.24e-08 3q9v-a1-m1-cA_3q9v-a1-m2-cB
16 2pmu-a1-m1-cD 96 93 0.2755 0.2812 0.2903 2.01e-08 2pmu-a1-m1-cC_2pmu-a1-m1-cD
17 5u8m-a1-m1-cB 229 95 0.3163 0.1354 0.3263 8.13e-08 5u8m-a1-m1-cA_5u8m-a1-m1-cB
18 5u8m-a1-m1-cA 229 95 0.3163 0.1354 0.3263 8.13e-08 5u8m-a1-m1-cA_5u8m-a1-m1-cB
19 6lxm-a2-m1-cA 100 72 0.2245 0.2200 0.3056 1.77e-06 6lxm-a2-m1-cA_6lxm-a2-m1-cB
20 6lxn-a1-m1-cB 101 72 0.2245 0.2178 0.3056 1.86e-06 6lxn-a1-m1-cB_6lxn-a1-m1-cA
21 6lxm-a2-m1-cB 101 72 0.2245 0.2178 0.3056 1.86e-06 6lxm-a2-m1-cA_6lxm-a2-m1-cB
22 6lxn-a1-m1-cA 110 72 0.2245 0.2000 0.3056 2.12e-06 6lxn-a1-m1-cB_6lxn-a1-m1-cA
23 6kyx-a1-m2-cA 100 71 0.2449 0.2400 0.3380 3.18e-06 6kyx-a1-m1-cA_6kyx-a1-m2-cA
24 6kyx-a1-m1-cA 100 71 0.2449 0.2400 0.3380 3.18e-06 6kyx-a1-m1-cA_6kyx-a1-m2-cA
25 5dcm-a1-m1-cB 98 73 0.2551 0.2551 0.3425 3.48e-06 5dcm-a1-m1-cA_5dcm-a1-m1-cB
26 6zwt-a2-m1-cD 99 71 0.2449 0.2424 0.3380 6.10e-06 6zwt-a2-m1-cB_6zwt-a2-m1-cD
27 6zwt-a2-m1-cB 99 71 0.2449 0.2424 0.3380 6.10e-06 6zwt-a2-m1-cB_6zwt-a2-m1-cD
28 5za3-a1-m1-cA 101 82 0.2245 0.2178 0.2683 0.010 5za3-a1-m1-cB_5za3-a1-m1-cA
29 5za3-a1-m1-cB 100 82 0.2245 0.2200 0.2683 0.012 5za3-a1-m1-cB_5za3-a1-m1-cA
30 4nhj-a1-m1-cB 101 82 0.2041 0.1980 0.2439 0.70 4nhj-a1-m1-cB_4nhj-a1-m1-cA
31 4nhj-a1-m1-cA 102 82 0.2041 0.1961 0.2439 0.74 4nhj-a1-m1-cB_4nhj-a1-m1-cA
32 3r38-a2-m3-cA 438 73 0.2347 0.0525 0.3151 8.5 3r38-a2-m1-cA_3r38-a2-m3-cA
33 3r38-a2-m1-cA 438 73 0.2347 0.0525 0.3151 8.5 3r38-a2-m1-cA_3r38-a2-m3-cA
34 3r38-a1-m2-cA 438 73 0.2347 0.0525 0.3151 8.5 3r38-a1-m1-cA_3r38-a1-m2-cA
35 3r38-a1-m1-cA 438 73 0.2347 0.0525 0.3151 8.5 3r38-a1-m1-cA_3r38-a1-m2-cA
36 8ffu-a2-m1-cC 358 59 0.1939 0.0531 0.3220 9.4 8ffu-a2-m1-cD_8ffu-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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