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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
NLEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAA
KNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5det-a1-m1-cB 94 94 1.0000 1.0000 1.0000 3.78e-64 5det-a1-m1-cA_5det-a1-m1-cB
2 5det-a1-m1-cA 91 91 0.9681 1.0000 1.0000 5.69e-62 5det-a1-m1-cA_5det-a1-m1-cB
3 5cyj-a1-m1-cB 89 91 0.9468 1.0000 0.9780 1.24e-56 5cyj-a1-m1-cA_5cyj-a1-m1-cB
4 5cyj-a1-m1-cA 89 91 0.9468 1.0000 0.9780 1.24e-56 5cyj-a1-m1-cA_5cyj-a1-m1-cB
5 5tkz-a1-m1-cB 89 89 0.5957 0.6292 0.6292 2.70e-35 5tkz-a1-m1-cA_5tkz-a1-m1-cB
6 5tkz-a1-m1-cA 89 89 0.5957 0.6292 0.6292 2.70e-35 5tkz-a1-m1-cA_5tkz-a1-m1-cB
7 5bjr-a2-m3-cB 84 84 0.5638 0.6310 0.6310 1.46e-32 5bjr-a2-m1-cB_5bjr-a2-m3-cB
8 5bjr-a2-m1-cB 84 84 0.5638 0.6310 0.6310 1.46e-32 5bjr-a2-m1-cB_5bjr-a2-m3-cB
9 5ca5-a1-m1-cB 248 59 0.2340 0.0887 0.3729 0.001 5ca5-a1-m1-cA_5ca5-a1-m1-cB
10 5ca5-a1-m1-cA 248 59 0.2340 0.0887 0.3729 0.001 5ca5-a1-m1-cA_5ca5-a1-m1-cB
11 5ifn-a1-m1-cA 257 58 0.2234 0.0817 0.3621 0.010 5ifn-a1-m1-cB_5ifn-a1-m1-cA
12 7sp0-a1-m1-cB 244 76 0.2872 0.1107 0.3553 0.010 7sp0-a1-m1-cB_7sp0-a1-m1-cA
13 5ifn-a1-m1-cB 252 58 0.2234 0.0833 0.3621 0.011 5ifn-a1-m1-cB_5ifn-a1-m1-cA
14 5ifm-a1-m1-cB 259 74 0.2660 0.0965 0.3378 0.018 5ifm-a1-m1-cA_5ifm-a1-m1-cB
15 3md3-a2-m2-cA 165 67 0.2021 0.1152 0.2836 0.019 3md3-a2-m1-cA_3md3-a2-m2-cA
16 3md3-a2-m1-cA 165 67 0.2021 0.1152 0.2836 0.019 3md3-a2-m1-cA_3md3-a2-m2-cA
17 5ifm-a1-m1-cA 254 74 0.2660 0.0984 0.3378 0.019 5ifm-a1-m1-cA_5ifm-a1-m1-cB
18 3md1-a4-m5-cB 79 63 0.2021 0.2405 0.3016 0.021 3md1-a4-m4-cB_3md1-a4-m5-cB
19 3md1-a4-m4-cB 79 63 0.2021 0.2405 0.3016 0.021 3md1-a4-m4-cB_3md1-a4-m5-cB
20 6gc5-a1-m1-cB 76 69 0.2021 0.2500 0.2754 0.021 6gc5-a1-m1-cB_6gc5-a1-m1-cA
21 7sp0-a1-m1-cA 253 74 0.2766 0.1028 0.3514 0.028 7sp0-a1-m1-cB_7sp0-a1-m1-cA
22 3nnc-a2-m4-cA 175 78 0.2128 0.1143 0.2564 0.049 3nnc-a2-m2-cA_3nnc-a2-m4-cA, 3nnc-a2-m3-cA_3nnc-a2-m4-cA
23 3nnc-a2-m3-cA 175 78 0.2128 0.1143 0.2564 0.049 3nnc-a2-m3-cA_3nnc-a2-m4-cA
24 3nnc-a2-m2-cA 175 78 0.2128 0.1143 0.2564 0.049 3nnc-a2-m2-cA_3nnc-a2-m4-cA
25 6r5k-a1-m1-cD 390 63 0.2128 0.0513 0.3175 0.34 6r5k-a1-m1-cD_6r5k-a1-m1-cH
26 6r5k-a1-m1-cH 394 63 0.2128 0.0508 0.3175 0.34 6r5k-a1-m1-cD_6r5k-a1-m1-cH, 6r5k-a1-m1-cF_6r5k-a1-m1-cH
27 6g6s-a1-m1-cB 91 72 0.1915 0.1978 0.2500 0.42 6g6s-a1-m1-cB_6g6s-a1-m1-cA
28 6g6s-a1-m1-cA 95 72 0.1915 0.1895 0.2500 0.43 6g6s-a1-m1-cB_6g6s-a1-m1-cA
29 6r5k-a1-m1-cF 165 63 0.2128 0.1212 0.3175 0.46 6r5k-a1-m1-cF_6r5k-a1-m1-cH
30 6gc5-a1-m1-cA 79 77 0.2340 0.2785 0.2857 0.51 6gc5-a1-m1-cB_6gc5-a1-m1-cA
31 1yj0-a2-m3-cA 317 34 0.1383 0.0410 0.3824 0.89 1yj0-a2-m2-cA_1yj0-a2-m3-cA
32 1yj0-a2-m2-cA 317 34 0.1383 0.0410 0.3824 0.89 1yj0-a2-m2-cA_1yj0-a2-m3-cA
33 6gd1-a1-m1-cB 187 73 0.2021 0.1016 0.2603 1.7 6gd1-a1-m1-cB_6gd1-a1-m1-cA
34 6gd1-a1-m1-cA 190 73 0.2021 0.1000 0.2603 1.8 6gd1-a1-m1-cB_6gd1-a1-m1-cA
35 2ek1-a1-m1-cA 76 53 0.2021 0.2500 0.3585 2.7 2ek1-a1-m1-cB_2ek1-a1-m1-cA
36 2ek1-a1-m1-cB 75 53 0.2021 0.2533 0.3585 2.7 2ek1-a1-m1-cB_2ek1-a1-m1-cA
37 3qua-a1-m1-cB 179 26 0.1170 0.0615 0.4231 6.9 3qua-a1-m1-cA_3qua-a1-m1-cB
38 3qua-a1-m1-cA 179 26 0.1170 0.0615 0.4231 6.9 3qua-a1-m1-cA_3qua-a1-m1-cB
39 2wag-a1-m2-cA 217 100 0.3298 0.1429 0.3100 7.6 2wag-a1-m1-cA_2wag-a1-m2-cA
40 2wag-a1-m1-cA 217 100 0.3298 0.1429 0.3100 7.6 2wag-a1-m1-cA_2wag-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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