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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=62)
NLHIQKDNPKIVHAFDMEDLGGKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKK
KE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4f1e-a8-m1-cO 62 62 1.0000 1.0000 1.0000 8.24e-43 4f1e-a8-m1-cO_4f1e-a8-m1-cP
2 4f1e-a8-m1-cP 63 61 0.9839 0.9683 1.0000 4.64e-42 4f1e-a8-m1-cO_4f1e-a8-m1-cP
3 4ooa-a2-m1-cD 64 61 0.6774 0.6562 0.6885 2.49e-26 4ooa-a2-m1-cC_4ooa-a2-m1-cD
4 4ooa-a2-m1-cC 64 61 0.6774 0.6562 0.6885 2.49e-26 4ooa-a2-m1-cC_4ooa-a2-m1-cD
5 7yvz-a1-m2-cA 63 59 0.5968 0.5873 0.6271 9.50e-25 7yvz-a1-m1-cA_7yvz-a1-m2-cA
6 7yvz-a1-m1-cA 63 59 0.5968 0.5873 0.6271 9.50e-25 7yvz-a1-m1-cA_7yvz-a1-m2-cA
7 3s2q-a2-m2-cB 65 62 0.5000 0.4769 0.5000 6.61e-18 3s2q-a2-m1-cA_3s2q-a2-m2-cB, 3s2q-a2-m2-cA_3s2q-a2-m2-cB
8 3s2q-a2-m2-cA 65 62 0.5000 0.4769 0.5000 6.61e-18 3s2q-a2-m2-cA_3s2q-a2-m2-cB
9 3s2q-a2-m1-cA 65 62 0.5000 0.4769 0.5000 6.61e-18 3s2q-a2-m1-cA_3s2q-a2-m2-cB
10 3tbm-a1-m1-cB 61 23 0.1935 0.1967 0.5217 0.020 3tbm-a1-m1-cA_3tbm-a1-m1-cB
11 3tbm-a1-m1-cA 61 23 0.1935 0.1967 0.5217 0.020 3tbm-a1-m1-cA_3tbm-a1-m1-cB
12 3tbo-a1-m2-cA 54 22 0.1935 0.2222 0.5455 0.53 3tbo-a1-m1-cA_3tbo-a1-m2-cA
13 3tbo-a1-m1-cA 54 22 0.1935 0.2222 0.5455 0.53 3tbo-a1-m1-cA_3tbo-a1-m2-cA
14 2xn2-a1-m4-cA 727 60 0.2581 0.0220 0.2667 8.6 2xn2-a1-m1-cA_2xn2-a1-m4-cA, 2xn2-a1-m2-cA_2xn2-a1-m4-cA, 2xn2-a1-m3-cA_2xn2-a1-m4-cA
15 2xn2-a1-m3-cA 727 60 0.2581 0.0220 0.2667 8.6 2xn2-a1-m3-cA_2xn2-a1-m4-cA
16 2xn2-a1-m2-cA 727 60 0.2581 0.0220 0.2667 8.6 2xn2-a1-m2-cA_2xn2-a1-m4-cA
17 2xn2-a1-m1-cA 727 60 0.2581 0.0220 0.2667 8.6 2xn2-a1-m1-cA_2xn2-a1-m4-cA

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Reference:
Jacob Schwartz et al.

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