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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
NLPRNPSMTGYEARLITFGTWMYSVNKEQLARAGFYAIGQEDKVQCFHCGGGLANWKPKE
DPWEQHAKWYPGCKYLLEEKGHEYINNIHLTRS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1xb0-a1-m1-cF 103 93 1.0000 0.9029 1.0000 7.93e-69 1xb0-a1-m1-cE_1xb0-a1-m1-cF
2 1xb1-a2-m1-cB 102 93 1.0000 0.9118 1.0000 1.08e-68 1xb1-a2-m2-cF_1xb1-a2-m1-cB
3 1xb0-a1-m1-cE 93 93 1.0000 1.0000 1.0000 2.52e-68 1xb0-a1-m1-cE_1xb0-a1-m1-cF
4 1xb1-a2-m1-cA 90 90 0.9677 1.0000 1.0000 6.29e-66 1xb1-a2-m2-cF_1xb1-a2-m1-cA
5 1xb1-a2-m2-cF 89 89 0.9570 1.0000 1.0000 3.13e-65 1xb1-a2-m2-cF_1xb1-a2-m1-cA, 1xb1-a2-m2-cF_1xb1-a2-m1-cB
6 4hy0-a3-m1-cE 96 93 0.8387 0.8125 0.8387 1.39e-58 4hy0-a3-m1-cE_4hy0-a3-m1-cD
7 3cm2-a5-m1-cG 102 93 0.8387 0.7647 0.8387 1.48e-58 3cm2-a5-m1-cE_3cm2-a5-m1-cG
8 3cm2-a5-m1-cE 102 93 0.8387 0.7647 0.8387 1.48e-58 3cm2-a5-m1-cE_3cm2-a5-m1-cG
9 4ec4-a5-m1-cL 107 93 0.8387 0.7290 0.8387 1.59e-58 4ec4-a5-m1-cL_4ec4-a5-m1-cE
10 4ec4-a5-m1-cE 108 93 0.8387 0.7222 0.8387 1.64e-58 4ec4-a5-m1-cL_4ec4-a5-m1-cE
11 5oqw-a1-m1-cB 107 93 0.8387 0.7290 0.8387 1.81e-58 5oqw-a1-m1-cA_5oqw-a1-m1-cB
12 4hy0-a3-m1-cD 98 93 0.8387 0.7959 0.8387 2.01e-58 4hy0-a3-m1-cE_4hy0-a3-m1-cD
13 5oqw-a1-m1-cA 106 93 0.8387 0.7358 0.8387 2.21e-58 5oqw-a1-m1-cA_5oqw-a1-m1-cB
14 2opy-a1-m2-cA 106 93 0.8387 0.7358 0.8387 2.21e-58 2opy-a1-m1-cA_2opy-a1-m2-cA
15 2opy-a1-m1-cA 106 93 0.8387 0.7358 0.8387 2.21e-58 2opy-a1-m1-cA_2opy-a1-m2-cA
16 2i3h-a7-m1-cB 95 93 0.5484 0.5368 0.5484 9.20e-32 2i3h-a7-m2-cA_2i3h-a7-m1-cB
17 2i3h-a6-m2-cB 95 93 0.5484 0.5368 0.5484 9.20e-32 2i3h-a6-m2-cA_2i3h-a6-m2-cB
18 2i3h-a7-m2-cA 90 89 0.5161 0.5333 0.5393 1.07e-29 2i3h-a7-m2-cA_2i3h-a7-m1-cB
19 2i3h-a6-m2-cA 90 89 0.5161 0.5333 0.5393 1.07e-29 2i3h-a6-m2-cA_2i3h-a6-m2-cB
20 2uvl-a1-m1-cA 94 87 0.4839 0.4787 0.5172 2.67e-27 2uvl-a1-m1-cA_2uvl-a1-m1-cB
21 2uvl-a1-m1-cB 95 87 0.4839 0.4737 0.5172 2.74e-27 2uvl-a1-m1-cA_2uvl-a1-m1-cB
22 1oxn-a6-m1-cB 101 93 0.4516 0.4158 0.4516 3.64e-26 1oxn-a6-m1-cD_1oxn-a6-m1-cB
23 1oxq-a9-m2-cE 94 93 0.4516 0.4468 0.4516 3.90e-26 1oxq-a9-m2-cE_1oxq-a9-m1-cD
24 3mup-a1-m1-cC 103 87 0.4516 0.4078 0.4828 8.10e-26 3mup-a1-m1-cD_3mup-a1-m1-cC
25 3mup-a1-m1-cD 102 87 0.4516 0.4118 0.4828 8.32e-26 3mup-a1-m1-cB_3mup-a1-m1-cD, 3mup-a1-m1-cD_3mup-a1-m1-cC
26 3mup-a1-m1-cB 100 87 0.4516 0.4200 0.4828 9.79e-26 3mup-a1-m1-cB_3mup-a1-m1-cD
27 1oxn-a7-m1-cA 99 91 0.4409 0.4141 0.4505 1.06e-25 1oxn-a7-m1-cA_1oxn-a7-m1-cD
28 1oxq-a9-m1-cD 100 91 0.4409 0.4100 0.4505 1.23e-25 1oxq-a9-m2-cE_1oxq-a9-m1-cD
29 1oxn-a7-m1-cD 100 91 0.4409 0.4100 0.4505 1.23e-25 1oxn-a7-m1-cA_1oxn-a7-m1-cD
30 1oxn-a6-m1-cD 100 91 0.4409 0.4100 0.4505 1.23e-25 1oxn-a6-m1-cD_1oxn-a6-m1-cB
31 4j3y-a1-m1-cA 83 77 0.3656 0.4096 0.4416 2.30e-18 4j3y-a1-m1-cC_4j3y-a1-m1-cA
32 4j3y-a1-m1-cC 77 74 0.3333 0.4026 0.4189 9.11e-16 4j3y-a1-m1-cC_4j3y-a1-m1-cA
33 1m4m-a3-m3-cA 112 80 0.3011 0.2500 0.3500 5.72e-10 1m4m-a3-m1-cA_1m4m-a3-m3-cA
34 1m4m-a3-m1-cA 112 80 0.3011 0.2500 0.3500 5.72e-10 1m4m-a3-m1-cA_1m4m-a3-m3-cA
35 1m4m-a2-m2-cA 112 80 0.3011 0.2500 0.3500 5.72e-10 1m4m-a2-m1-cA_1m4m-a2-m2-cA
36 1m4m-a2-m1-cA 112 80 0.3011 0.2500 0.3500 5.72e-10 1m4m-a2-m1-cA_1m4m-a2-m2-cA
37 3uef-a1-m1-cA 136 80 0.3011 0.2059 0.3500 3.65e-09 3uef-a1-m1-cA_3uef-a1-m1-cC
38 3uef-a1-m1-cC 137 80 0.3011 0.2044 0.3500 3.88e-09 3uef-a1-m1-cA_3uef-a1-m1-cC
39 8atu-a1-m1-cB 2837 85 0.2903 0.0095 0.3176 5.71e-09 8atu-a1-m1-cA_8atu-a1-m1-cB
40 8atu-a1-m1-cA 2837 85 0.2903 0.0095 0.3176 5.71e-09 8atu-a1-m1-cA_8atu-a1-m1-cB
41 6gjw-a2-m1-cC 78 65 0.2366 0.2821 0.3385 1.01e-07 6gjw-a2-m1-cB_6gjw-a2-m1-cC
42 6gjw-a2-m1-cB 78 65 0.2366 0.2821 0.3385 1.01e-07 6gjw-a2-m1-cB_6gjw-a2-m1-cC
43 2poi-a1-m2-cA 78 65 0.2366 0.2821 0.3385 1.01e-07 2poi-a1-m1-cA_2poi-a1-m2-cA
44 2poi-a1-m1-cA 78 65 0.2366 0.2821 0.3385 1.01e-07 2poi-a1-m1-cA_2poi-a1-m2-cA
45 3fa3-a2-m1-cH 301 32 0.1398 0.0432 0.4062 2.1 3fa3-a2-m1-cE_3fa3-a2-m1-cH, 3fa3-a2-m1-cF_3fa3-a2-m1-cH
46 3fa3-a2-m1-cF 301 32 0.1398 0.0432 0.4062 2.1 3fa3-a2-m1-cF_3fa3-a2-m1-cH
47 3fa3-a2-m1-cE 301 32 0.1398 0.0432 0.4062 2.1 3fa3-a2-m1-cE_3fa3-a2-m1-cH
48 7u58-a1-m1-cA 651 55 0.1613 0.0230 0.2727 8.6 7u58-a1-m1-cB_7u58-a1-m1-cA
49 7u58-a1-m1-cB 641 55 0.1613 0.0234 0.2727 8.9 7u58-a1-m1-cB_7u58-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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