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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=78)
NLYFQGTANLTTSLLGDLLDDVTSIRHAVLQNRAAIDFLLLAHGHGCEDVAGMCSFNLSD
QSESIQKKFQLMKEHVNK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5h9c-a1-m3-cA 78 78 1.0000 1.0000 1.0000 1.20e-53 5h9c-a1-m2-cA_5h9c-a1-m3-cA
2 5h9c-a1-m2-cA 78 78 1.0000 1.0000 1.0000 1.20e-53 5h9c-a1-m2-cA_5h9c-a1-m3-cA
3 7s94-a2-m1-cF 83 64 0.2692 0.2530 0.3281 8.70e-05 7s94-a2-m1-cE_7s94-a2-m1-cF
4 4g2k-a1-m1-cC 107 67 0.3205 0.2336 0.3731 1.83e-04 4g2k-a1-m1-cC_4g2k-a1-m1-cB
5 4g2k-a1-m1-cB 108 67 0.3205 0.2315 0.3731 1.94e-04 4g2k-a1-m1-cC_4g2k-a1-m1-cB
6 7s94-a2-m1-cE 76 62 0.2564 0.2632 0.3226 4.60e-04 7s94-a2-m1-cE_7s94-a2-m1-cF
7 4n21-a2-m1-cE 121 73 0.3077 0.1983 0.3288 7.87e-04 4n21-a2-m1-cE_4n21-a2-m1-cD
8 4n21-a2-m1-cD 123 73 0.3077 0.1951 0.3288 8.22e-04 4n21-a2-m1-cE_4n21-a2-m1-cD
9 4jgs-a2-m1-cF 80 56 0.2308 0.2250 0.3214 0.001 4jgs-a2-m1-cF_4jgs-a2-m1-cB
10 4jgs-a2-m1-cB 82 56 0.2308 0.2195 0.3214 0.001 4jgs-a2-m1-cF_4jgs-a2-m1-cB
11 4jf3-a2-m5-cB 92 45 0.2308 0.1957 0.4000 0.001 4jf3-a2-m4-cB_4jf3-a2-m5-cB
12 4jf3-a2-m4-cB 92 45 0.2308 0.1957 0.4000 0.001 4jf3-a2-m4-cB_4jf3-a2-m5-cB
13 1mof-a1-m3-cA 53 42 0.1923 0.2830 0.3571 0.004 1mof-a1-m2-cA_1mof-a1-m3-cA
14 1mof-a1-m2-cA 53 42 0.1923 0.2830 0.3571 0.004 1mof-a1-m2-cA_1mof-a1-m3-cA
15 5ha6-a1-m4-cA 93 61 0.2308 0.1935 0.2951 0.006 5ha6-a1-m2-cA_5ha6-a1-m4-cA
16 5ha6-a1-m2-cA 93 61 0.2308 0.1935 0.2951 0.006 5ha6-a1-m2-cA_5ha6-a1-m4-cA
17 3s88-a5-m9-cJ 106 53 0.2564 0.1887 0.3774 0.006 3s88-a5-m5-cJ_3s88-a5-m9-cJ
18 3s88-a5-m5-cJ 106 53 0.2564 0.1887 0.3774 0.006 3s88-a5-m5-cJ_3s88-a5-m9-cJ
19 5uqy-a1-m3-cB 127 58 0.2949 0.1811 0.3966 0.13 5uqy-a1-m2-cB_5uqy-a1-m3-cB
20 5uqy-a1-m2-cB 127 58 0.2949 0.1811 0.3966 0.13 5uqy-a1-m2-cB_5uqy-a1-m3-cB
21 3k2k-a1-m4-cA 376 37 0.1667 0.0346 0.3514 3.4 3k2k-a1-m1-cA_3k2k-a1-m4-cA, 3k2k-a1-m3-cA_3k2k-a1-m4-cA
22 3k2k-a1-m3-cA 376 37 0.1667 0.0346 0.3514 3.4 3k2k-a1-m3-cA_3k2k-a1-m4-cA
23 3k2k-a1-m1-cA 376 37 0.1667 0.0346 0.3514 3.4 3k2k-a1-m1-cA_3k2k-a1-m4-cA
24 3p6b-a1-m2-cB 186 28 0.1538 0.0645 0.4286 4.7 3p6b-a1-m1-cA_3p6b-a1-m2-cB
25 3p6b-a1-m1-cA 186 28 0.1538 0.0645 0.4286 4.7 3p6b-a1-m1-cA_3p6b-a1-m2-cB
26 5uqy-a2-m1-cN 92 37 0.2308 0.1957 0.4865 5.9 5uqy-a2-m1-cN_5uqy-a2-m1-cF
27 4z6k-a1-m1-cC 345 38 0.1410 0.0319 0.2895 7.3 4z6k-a1-m1-cD_4z6k-a1-m1-cC
28 4z6k-a1-m1-cA 345 38 0.1410 0.0319 0.2895 7.3 4z6k-a1-m1-cD_4z6k-a1-m1-cA
29 7p3r-a1-m1-cD 341 34 0.1667 0.0381 0.3824 8.1 7p3r-a1-m1-cA_7p3r-a1-m1-cD, 7p3r-a1-m1-cB_7p3r-a1-m1-cD, 7p3r-a1-m1-cC_7p3r-a1-m1-cD
30 7p3r-a1-m1-cB 341 34 0.1667 0.0381 0.3824 8.1 7p3r-a1-m1-cB_7p3r-a1-m1-cD
31 7p3r-a1-m1-cC 328 34 0.1667 0.0396 0.3824 8.1 7p3r-a1-m1-cA_7p3r-a1-m1-cC, 7p3r-a1-m1-cC_7p3r-a1-m1-cD
32 7p3r-a1-m1-cA 328 34 0.1667 0.0396 0.3824 8.1 7p3r-a1-m1-cA_7p3r-a1-m1-cC, 7p3r-a1-m1-cA_7p3r-a1-m1-cD
33 3crj-a2-m1-cD 184 19 0.1026 0.0435 0.4211 9.1 3crj-a2-m1-cC_3crj-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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