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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=89)
NLYFQSNAKTLKELRTDYGLTQKELGDLFKVSSRTIQNEKDSTNIKDSLLSKYSAFNVKY
DDIFLGNEYENFVFTNDKKKSIILAFKEK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3mlf-a1-m1-cA 92 89 1.0000 0.9674 1.0000 8.42e-59 3mlf-a1-m1-cB_3mlf-a1-m1-cA
2 3mlf-a1-m1-cB 89 89 1.0000 1.0000 1.0000 1.03e-58 3mlf-a1-m1-cB_3mlf-a1-m1-cA
3 2b5a-a2-m1-cD 76 21 0.1236 0.1447 0.5238 0.26 2b5a-a2-m1-cC_2b5a-a2-m1-cD
4 2b5a-a2-m1-cC 76 21 0.1236 0.1447 0.5238 0.26 2b5a-a2-m1-cC_2b5a-a2-m1-cD
5 3ssn-a1-m1-cB 350 45 0.1348 0.0343 0.2667 1.9 3ssn-a1-m1-cB_3ssn-a1-m1-cD
6 3sso-a2-m2-cF 393 45 0.1348 0.0305 0.2667 1.9 3sso-a2-m1-cF_3sso-a2-m2-cF, 3sso-a2-m2-cF_3sso-a2-m1-cE
7 3sso-a2-m1-cF 393 45 0.1348 0.0305 0.2667 1.9 3sso-a2-m1-cF_3sso-a2-m2-cF
8 3sso-a1-m1-cA 393 45 0.1348 0.0305 0.2667 1.9 3sso-a1-m1-cA_3sso-a1-m1-cB
9 3ssn-a1-m1-cD 393 45 0.1348 0.0305 0.2667 1.9 3ssn-a1-m1-cB_3ssn-a1-m1-cD
10 3sso-a2-m1-cE 394 45 0.1348 0.0305 0.2667 1.9 3sso-a2-m2-cF_3sso-a2-m1-cE
11 3sso-a1-m1-cB 394 45 0.1348 0.0305 0.2667 1.9 3sso-a1-m1-cA_3sso-a1-m1-cB
12 4jo0-a1-m2-cA 522 47 0.1461 0.0249 0.2766 3.5 4jo0-a1-m1-cA_4jo0-a1-m2-cA
13 4jo0-a1-m1-cA 522 47 0.1461 0.0249 0.2766 3.5 4jo0-a1-m1-cA_4jo0-a1-m2-cA
14 2d1h-a1-m1-cB 96 33 0.1124 0.1042 0.3030 3.7 2d1h-a1-m1-cB_2d1h-a1-m1-cA
15 2d1h-a1-m1-cA 98 33 0.1124 0.1020 0.3030 3.9 2d1h-a1-m1-cB_2d1h-a1-m1-cA
16 3op9-a1-m4-cA 106 29 0.1011 0.0849 0.3103 5.6 3op9-a1-m1-cA_3op9-a1-m4-cA, 3op9-a1-m2-cA_3op9-a1-m4-cA, 3op9-a1-m3-cA_3op9-a1-m4-cA
17 3op9-a1-m3-cA 106 29 0.1011 0.0849 0.3103 5.6 3op9-a1-m3-cA_3op9-a1-m4-cA
18 3op9-a1-m2-cA 106 29 0.1011 0.0849 0.3103 5.6 3op9-a1-m2-cA_3op9-a1-m4-cA
19 3op9-a1-m1-cA 106 29 0.1011 0.0849 0.3103 5.6 3op9-a1-m1-cA_3op9-a1-m4-cA
20 4ryk-a1-m2-cA 290 75 0.2584 0.0793 0.3067 5.9 4ryk-a1-m1-cA_4ryk-a1-m2-cA
21 4ryk-a1-m1-cA 290 75 0.2584 0.0793 0.3067 5.9 4ryk-a1-m1-cA_4ryk-a1-m2-cA
22 4ehi-a2-m2-cB 493 30 0.1573 0.0284 0.4667 6.8 4ehi-a2-m1-cA_4ehi-a2-m2-cB
23 4ehi-a1-m1-cB 493 30 0.1573 0.0284 0.4667 6.8 4ehi-a1-m1-cA_4ehi-a1-m1-cB
24 4ehi-a2-m1-cA 472 30 0.1573 0.0297 0.4667 6.8 4ehi-a2-m1-cA_4ehi-a2-m2-cB
25 4ehi-a1-m1-cA 472 30 0.1573 0.0297 0.4667 6.8 4ehi-a1-m1-cA_4ehi-a1-m1-cB
26 1j5w-a1-m1-cA 270 32 0.1685 0.0556 0.4688 6.9 1j5w-a1-m1-cA_1j5w-a1-m1-cB
27 1j5w-a1-m1-cB 272 32 0.1685 0.0551 0.4688 6.9 1j5w-a1-m1-cA_1j5w-a1-m1-cB
28 4db3-a2-m2-cA 311 66 0.2584 0.0740 0.3485 7.5 4db3-a2-m1-cA_4db3-a2-m2-cA
29 4db3-a2-m1-cA 311 66 0.2584 0.0740 0.3485 7.5 4db3-a2-m1-cA_4db3-a2-m2-cA
30 7ums-a1-m1-c3 486 30 0.1348 0.0247 0.4000 9.2 7ums-a1-m1-c3_7ums-a1-m1-c1, 7ums-a1-m1-c3_7ums-a1-m1-c2
31 7ums-a1-m1-c2 499 30 0.1348 0.0240 0.4000 9.3 7ums-a1-m1-c1_7ums-a1-m1-c2, 7ums-a1-m1-c3_7ums-a1-m1-c2
32 7ums-a1-m1-c1 499 30 0.1348 0.0240 0.4000 9.3 7ums-a1-m1-c1_7ums-a1-m1-c2, 7ums-a1-m1-c3_7ums-a1-m1-c1
33 1n6b-a2-m4-cA 462 46 0.1573 0.0303 0.3043 9.8 1n6b-a2-m2-cA_1n6b-a2-m4-cA, 1n6b-a2-m3-cA_1n6b-a2-m4-cA
34 1n6b-a2-m3-cA 462 46 0.1573 0.0303 0.3043 9.8 1n6b-a2-m3-cA_1n6b-a2-m4-cA
35 1n6b-a2-m2-cA 462 46 0.1573 0.0303 0.3043 9.8 1n6b-a2-m2-cA_1n6b-a2-m4-cA

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Reference:
Jacob Schwartz et al.

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