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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=65)
NRQFLSLTGVSKVQSFDPKEILLETIQGVLSIKGEKLGIKHLDLKAGQVEVEGLIDALVY
PLEHH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3ipf-a1-m1-cB 65 65 1.0000 1.0000 1.0000 2.54e-41 3ipf-a1-m1-cB_3ipf-a1-m1-cA
2 3ipf-a1-m1-cA 69 65 1.0000 0.9420 1.0000 3.89e-41 3ipf-a1-m1-cB_3ipf-a1-m1-cA
3 2ks0-a1-m1-cB 66 65 0.9231 0.9091 0.9231 5.22e-35 2ks0-a1-m1-cA_2ks0-a1-m1-cB
4 2ks0-a1-m1-cA 66 65 0.9231 0.9091 0.9231 5.22e-35 2ks0-a1-m1-cA_2ks0-a1-m1-cB
5 3hsl-a1-m2-cX 287 54 0.2923 0.0662 0.3519 0.62 3hsl-a1-m1-cX_3hsl-a1-m2-cX
6 3hsl-a1-m1-cX 287 54 0.2923 0.0662 0.3519 0.62 3hsl-a1-m1-cX_3hsl-a1-m2-cX
7 3e2t-a2-m2-cA 307 29 0.2154 0.0456 0.4828 1.9 3e2t-a2-m1-cA_3e2t-a2-m2-cA
8 3e2t-a2-m1-cA 307 29 0.2154 0.0456 0.4828 1.9 3e2t-a2-m1-cA_3e2t-a2-m2-cA
9 5j7n-a3-m3-cA 109 20 0.1538 0.0917 0.5000 2.1 5j7n-a3-m1-cA_5j7n-a3-m3-cA
10 5j7n-a3-m1-cA 109 20 0.1538 0.0917 0.5000 2.1 5j7n-a3-m1-cA_5j7n-a3-m3-cA
11 5j7n-a2-m2-cA 109 20 0.1538 0.0917 0.5000 2.1 5j7n-a2-m1-cA_5j7n-a2-m2-cA
12 5j7n-a2-m1-cA 109 20 0.1538 0.0917 0.5000 2.1 5j7n-a2-m1-cA_5j7n-a2-m2-cA
13 3gla-a1-m1-cA 97 20 0.1385 0.0928 0.4500 3.7 3gla-a1-m1-cA_3gla-a1-m1-cB
14 3gla-a1-m1-cB 99 20 0.1385 0.0909 0.4500 3.8 3gla-a1-m1-cA_3gla-a1-m1-cB
15 3k17-a1-m1-cD 347 17 0.1538 0.0288 0.5882 4.4 3k17-a1-m1-cC_3k17-a1-m1-cD
16 3k17-a1-m1-cC 347 17 0.1538 0.0288 0.5882 4.4 3k17-a1-m1-cB_3k17-a1-m1-cC, 3k17-a1-m1-cC_3k17-a1-m1-cD
17 3k17-a1-m1-cB 347 17 0.1538 0.0288 0.5882 4.4 3k17-a1-m1-cB_3k17-a1-m1-cC
18 1jof-a2-m1-cH 355 57 0.2923 0.0535 0.3333 5.5 1jof-a2-m1-cE_1jof-a2-m1-cH, 1jof-a2-m1-cG_1jof-a2-m1-cH
19 1jof-a2-m1-cG 355 57 0.2923 0.0535 0.3333 5.5 1jof-a2-m1-cG_1jof-a2-m1-cH
20 1jof-a2-m1-cE 355 57 0.2923 0.0535 0.3333 5.5 1jof-a2-m1-cE_1jof-a2-m1-cH
21 2cbn-a1-m2-cA 306 61 0.2308 0.0490 0.2459 6.4 2cbn-a1-m1-cA_2cbn-a1-m2-cA
22 2cbn-a1-m1-cA 306 61 0.2308 0.0490 0.2459 6.4 2cbn-a1-m1-cA_2cbn-a1-m2-cA
23 5j6d-a3-m1-cA 292 29 0.2000 0.0445 0.4483 6.9 5j6d-a3-m1-cB_5j6d-a3-m1-cA
24 7jg2-a1-m1-cB 224 26 0.1692 0.0491 0.4231 8.9 7jg2-a1-m1-cB_7jg2-a1-m1-cC
25 7jg1-a1-m1-cB 224 26 0.1692 0.0491 0.4231 8.9 7jg1-a1-m1-cB_7jg1-a1-m1-cD
26 7jg1-a1-m1-cD 228 26 0.1692 0.0482 0.4231 8.9 7jg1-a1-m1-cB_7jg1-a1-m1-cD
27 7jg2-a1-m1-cD 231 26 0.1692 0.0476 0.4231 9.0 7jg2-a1-m1-cA_7jg2-a1-m1-cD, 7jg2-a1-m1-cC_7jg2-a1-m1-cD
28 7jg2-a1-m1-cC 231 26 0.1692 0.0476 0.4231 9.0 7jg2-a1-m1-cA_7jg2-a1-m1-cC, 7jg2-a1-m1-cB_7jg2-a1-m1-cC, 7jg2-a1-m1-cC_7jg2-a1-m1-cD
29 7jg2-a1-m1-cA 231 26 0.1692 0.0476 0.4231 9.0 7jg2-a1-m1-cA_7jg2-a1-m1-cC, 7jg2-a1-m1-cA_7jg2-a1-m1-cD
30 5cj4-a2-m1-cD 175 41 0.2000 0.0743 0.3171 9.7 5cj4-a2-m1-cD_5cj4-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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