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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=92)
NVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWVNVV
ESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2pmu-a1-m1-cC 92 92 1.0000 1.0000 1.0000 8.14e-64 2pmu-a1-m1-cC_2pmu-a1-m1-cD
2 5ed4-a2-m1-cE 224 99 1.0000 0.4107 0.9293 2.49e-60 5ed4-a2-m1-cF_5ed4-a2-m1-cE
3 3r0j-a1-m1-cA 221 99 1.0000 0.4163 0.9293 3.05e-60 3r0j-a1-m1-cB_3r0j-a1-m1-cA
4 2pmu-a1-m1-cD 96 96 0.9891 0.9479 0.9479 3.79e-60 2pmu-a1-m1-cC_2pmu-a1-m1-cD
5 5ed4-a2-m1-cF 214 99 0.9891 0.4252 0.9192 2.16e-59 5ed4-a2-m1-cF_5ed4-a2-m1-cE
6 3r0j-a1-m1-cB 218 97 0.9783 0.4128 0.9278 1.03e-58 3r0j-a1-m1-cB_3r0j-a1-m1-cA
7 1ys7-a1-m1-cB 226 94 0.4022 0.1637 0.3936 1.86e-14 1ys7-a1-m1-cA_1ys7-a1-m1-cB
8 1ys7-a1-m1-cA 224 93 0.4022 0.1652 0.3978 4.34e-13 1ys7-a1-m1-cA_1ys7-a1-m1-cB
9 7e1f-a1-m1-cB 93 90 0.3696 0.3656 0.3778 6.99e-13 7e1f-a1-m1-cB_7e1f-a1-m1-cA
10 7e1f-a1-m1-cA 95 90 0.3696 0.3579 0.3778 7.10e-13 7e1f-a1-m1-cB_7e1f-a1-m1-cA
11 6kyx-a1-m2-cA 100 90 0.3478 0.3200 0.3556 7.24e-13 6kyx-a1-m1-cA_6kyx-a1-m2-cA
12 6kyx-a1-m1-cA 100 90 0.3478 0.3200 0.3556 7.24e-13 6kyx-a1-m1-cA_6kyx-a1-m2-cA
13 7e1b-a1-m1-cD 208 86 0.3696 0.1635 0.3953 1.38e-12 7e1b-a1-m1-cD_7e1b-a1-m1-cC
14 7e1b-a2-m1-cH 208 86 0.3696 0.1635 0.3953 1.54e-12 7e1b-a2-m1-cF_7e1b-a2-m1-cH, 7e1b-a2-m1-cH_7e1b-a2-m1-cE
15 7e1b-a2-m1-cF 208 86 0.3696 0.1635 0.3953 1.54e-12 7e1b-a2-m1-cF_7e1b-a2-m1-cH
16 7e1b-a2-m1-cE 209 87 0.3696 0.1627 0.3908 1.92e-12 7e1b-a2-m1-cH_7e1b-a2-m1-cE
17 7e1b-a1-m1-cC 209 87 0.3696 0.1627 0.3908 2.06e-12 7e1b-a1-m1-cD_7e1b-a1-m1-cC
18 5u8m-a1-m1-cB 229 95 0.3370 0.1354 0.3263 4.84e-12 5u8m-a1-m1-cA_5u8m-a1-m1-cB
19 5u8m-a1-m1-cA 229 95 0.3370 0.1354 0.3263 4.84e-12 5u8m-a1-m1-cA_5u8m-a1-m1-cB
20 3q9v-a1-m2-cB 99 95 0.3696 0.3434 0.3579 6.54e-11 3q9v-a1-m1-cA_3q9v-a1-m2-cB
21 3q9v-a1-m1-cA 98 95 0.3696 0.3469 0.3579 6.98e-11 3q9v-a1-m1-cA_3q9v-a1-m2-cB
22 4kfc-a1-m1-cA 223 91 0.3370 0.1390 0.3407 7.14e-09 4kfc-a1-m1-cA_4kfc-a1-m1-cB
23 5x5l-a1-m1-cA 95 93 0.2935 0.2842 0.2903 7.40e-09 5x5l-a1-m1-cA_5x5l-a1-m1-cE
24 4kfc-a1-m1-cB 224 91 0.3370 0.1384 0.3407 7.64e-09 4kfc-a1-m1-cA_4kfc-a1-m1-cB
25 2oqr-a1-m2-cA 226 90 0.3261 0.1327 0.3333 1.30e-08 2oqr-a1-m1-cA_2oqr-a1-m2-cA
26 2oqr-a1-m1-cA 226 90 0.3261 0.1327 0.3333 1.30e-08 2oqr-a1-m1-cA_2oqr-a1-m2-cA
27 5dcm-a1-m1-cA 97 96 0.3370 0.3196 0.3229 4.44e-07 5dcm-a1-m1-cA_5dcm-a1-m1-cB
28 4b09-a1-m1-cA 216 86 0.2609 0.1111 0.2791 3.66e-06 4b09-a1-m1-cB_4b09-a1-m1-cA
29 4b09-a1-m1-cB 214 86 0.2609 0.1121 0.2791 3.70e-06 4b09-a1-m1-cB_4b09-a1-m1-cA
30 6zwt-a2-m1-cD 99 88 0.2935 0.2727 0.3068 8.45e-06 6zwt-a2-m1-cB_6zwt-a2-m1-cD
31 6zwt-a2-m1-cB 99 88 0.2935 0.2727 0.3068 8.45e-06 6zwt-a2-m1-cB_6zwt-a2-m1-cD
32 5dcm-a1-m1-cB 98 94 0.3261 0.3061 0.3191 1.12e-05 5dcm-a1-m1-cA_5dcm-a1-m1-cB
33 4s04-a2-m1-cF 219 93 0.2609 0.1096 0.2581 2.64e-04 4s04-a2-m1-cE_4s04-a2-m1-cF
34 4s04-a2-m1-cE 219 93 0.2609 0.1096 0.2581 2.64e-04 4s04-a2-m1-cE_4s04-a2-m1-cF
35 3wqp-a2-m3-cG 435 58 0.1957 0.0414 0.3103 6.5 3wqp-a2-m3-cF_3wqp-a2-m3-cG
36 3wqp-a2-m3-cF 435 58 0.1957 0.0414 0.3103 6.5 3wqp-a2-m3-cF_3wqp-a2-m3-cG
37 3kdn-a1-m1-cJ 436 58 0.1957 0.0413 0.3103 6.5 3kdn-a1-m1-cD_3kdn-a1-m1-cJ
38 3kdn-a1-m1-cD 436 58 0.1957 0.0413 0.3103 6.5 3kdn-a1-m1-cD_3kdn-a1-m1-cJ
39 3a12-a1-m1-cA 436 58 0.1957 0.0413 0.3103 6.5 3a12-a1-m1-cA_3a12-a1-m2-cB
40 3a12-a1-m2-cB 437 58 0.1957 0.0412 0.3103 6.5 3a12-a1-m1-cA_3a12-a1-m2-cB

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Reference:
Jacob Schwartz et al.

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