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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
NVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
TWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2gib-a3-m3-cA 97 97 1.0000 1.0000 1.0000 3.36e-70 2gib-a3-m1-cA_2gib-a3-m3-cA
2 2gib-a3-m1-cA 97 97 1.0000 1.0000 1.0000 3.36e-70 2gib-a3-m1-cA_2gib-a3-m3-cA
3 2gib-a2-m2-cA 97 97 1.0000 1.0000 1.0000 3.36e-70 2gib-a2-m1-cA_2gib-a2-m2-cA
4 2gib-a2-m1-cA 97 97 1.0000 1.0000 1.0000 3.36e-70 2gib-a2-m1-cA_2gib-a2-m2-cA
5 7uxz-a3-m1-cFFF 109 96 0.9485 0.8440 0.9583 2.90e-66 7uxz-a3-m1-cEEE_7uxz-a3-m1-cFFF
6 7uxz-a3-m1-cEEE 109 96 0.9485 0.8440 0.9583 2.90e-66 7uxz-a3-m1-cEEE_7uxz-a3-m1-cFFF
7 6g13-a2-m1-cD 114 101 0.5361 0.4561 0.5149 3.76e-27 6g13-a2-m1-cB_6g13-a2-m1-cD
8 6g13-a2-m1-cB 113 101 0.5361 0.4602 0.5149 4.21e-27 6g13-a2-m1-cB_6g13-a2-m1-cD
9 5epw-a1-m1-cA 104 65 0.2371 0.2212 0.3538 6.91e-08 5epw-a1-m1-cA_5epw-a1-m1-cB
10 5epw-a1-m1-cB 110 65 0.2371 0.2091 0.3538 8.73e-08 5epw-a1-m1-cA_5epw-a1-m1-cB
11 2ge7-a1-m1-cA 107 95 0.2784 0.2523 0.2842 4.50e-07 2ge7-a1-m1-cA_2ge7-a1-m1-cB
12 2ge7-a1-m1-cB 108 95 0.2784 0.2500 0.2842 4.58e-07 2ge7-a1-m1-cA_2ge7-a1-m1-cB
13 3skv-a3-m1-cA 354 47 0.1753 0.0480 0.3617 0.97 3skv-a3-m1-cB_3skv-a3-m1-cA
14 3skv-a3-m1-cB 332 41 0.1649 0.0482 0.3902 1.6 3skv-a3-m1-cB_3skv-a3-m1-cA
15 5w5a-a1-m1-cB 221 37 0.1340 0.0588 0.3514 2.1 5w5a-a1-m1-cA_5w5a-a1-m1-cB
16 5w5a-a1-m1-cA 220 37 0.1340 0.0591 0.3514 2.1 5w5a-a1-m1-cA_5w5a-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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