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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
NWMGRAKEIGNGGWDQFQFLFFDPNGYLYAVSNDKLYKASPPQSDTDNWIARATEIGSGG
WSGFKFLFFHPNGYLYAVRGQRFYKALPPVSNQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3kif-a3-m1-cJ 93 93 1.0000 1.0000 1.0000 8.60e-66 3kif-a3-m1-cG_3kif-a3-m1-cJ, 3kif-a3-m1-cH_3kif-a3-m1-cJ
2 3kif-a3-m1-cI 94 91 0.9785 0.9681 1.0000 3.22e-64 3kif-a3-m1-cH_3kif-a3-m1-cI
3 3kif-a3-m1-cI 94 48 0.3333 0.3298 0.6458 5.05e-17 3kif-a3-m1-cH_3kif-a3-m1-cI
4 3kif-a3-m1-cF 92 90 0.9677 0.9783 1.0000 1.42e-63 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cF
5 3kif-a3-m1-cF 92 47 0.3226 0.3261 0.6383 4.20e-16 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cF
6 3kif-a1-m1-cA 93 90 0.9677 0.9677 1.0000 1.43e-63 3kif-a1-m1-cG_3kif-a1-m1-cA
7 3kif-a1-m1-cA 93 48 0.3333 0.3333 0.6458 5.20e-17 3kif-a1-m1-cG_3kif-a1-m1-cA
8 3kif-a3-m1-cG 88 88 0.9462 1.0000 1.0000 5.55e-62 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
9 3kif-a3-m1-cG 88 42 0.3011 0.3182 0.6667 1.73e-14 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
10 3kif-a3-m1-cG 88 44 0.3011 0.3182 0.6364 4.67e-14 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
11 3kif-a1-m1-cG 88 88 0.9462 1.0000 1.0000 5.55e-62 3kif-a1-m1-cG_3kif-a1-m1-cA
12 3kif-a1-m1-cG 88 42 0.3011 0.3182 0.6667 1.73e-14 3kif-a1-m1-cG_3kif-a1-m1-cA
13 3kif-a1-m1-cG 88 44 0.3011 0.3182 0.6364 4.67e-14 3kif-a1-m1-cG_3kif-a1-m1-cA
14 3kif-a3-m1-cH 85 85 0.9140 1.0000 1.0000 4.44e-59 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
15 3kif-a3-m1-cH 85 44 0.3118 0.3412 0.6591 6.04e-15 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
16 3kif-a3-m1-cH 85 38 0.2688 0.2941 0.6579 3.78e-11 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
17 3kih-a1-m1-cB 95 60 0.5806 0.5684 0.9000 5.96e-35 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cB
18 3kih-a1-m1-cB 95 80 0.5161 0.5053 0.6000 3.07e-31 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cB
19 3kih-a1-m1-cC 91 58 0.5591 0.5714 0.8966 1.23e-33 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
20 3kih-a1-m1-cC 91 80 0.5054 0.5165 0.5875 2.18e-28 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
21 3kih-a1-m1-cE 90 57 0.5484 0.5667 0.8947 4.57e-33 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
22 3kih-a1-m1-cE 90 80 0.5054 0.5222 0.5875 2.12e-28 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
23 3kih-a1-m1-cA 90 57 0.5484 0.5667 0.8947 4.57e-33 3kih-a1-m1-cA_3kih-a1-m1-cC
24 3kih-a1-m1-cA 90 80 0.5054 0.5222 0.5875 2.12e-28 3kih-a1-m1-cA_3kih-a1-m1-cC
25 3kih-a1-m1-cD 91 56 0.5376 0.5495 0.8929 3.09e-32 3kih-a1-m1-cE_3kih-a1-m1-cD
26 3kih-a1-m1-cD 91 80 0.5161 0.5275 0.6000 3.30e-31 3kih-a1-m1-cE_3kih-a1-m1-cD
27 1g8k-a6-m1-cC 822 89 0.2581 0.0292 0.2697 3.2 1g8k-a6-m1-cA_1g8k-a6-m1-cC
28 1g8k-a6-m1-cA 822 89 0.2581 0.0292 0.2697 3.2 1g8k-a6-m1-cA_1g8k-a6-m1-cC
29 7vee-a1-m2-cA 828 52 0.1935 0.0217 0.3462 3.8 7vee-a1-m1-cA_7vee-a1-m2-cA
30 7vee-a1-m1-cA 828 52 0.1935 0.0217 0.3462 3.8 7vee-a1-m1-cA_7vee-a1-m2-cA
31 7t2p-a1-m3-cA 493 65 0.1828 0.0345 0.2615 5.2 7t2p-a1-m2-cA_7t2p-a1-m3-cA
32 7t2p-a1-m2-cA 493 65 0.1828 0.0345 0.2615 5.2 7t2p-a1-m2-cA_7t2p-a1-m3-cA
33 5w4a-a2-m1-cD 210 26 0.1183 0.0524 0.4231 6.0 5w4a-a2-m1-cD_5w4a-a2-m1-cB
34 5w4a-a2-m1-cB 212 26 0.1183 0.0519 0.4231 6.2 5w4a-a2-m1-cD_5w4a-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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