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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=72)
NYDDINVKVDFILLEKNMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELVSIE
DGYGIEISSWMV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4tt9-a2-m1-cC 72 72 1.0000 1.0000 1.0000 2.01e-46 4tt9-a2-m1-cD_4tt9-a2-m1-cC
2 4tt9-a2-m1-cD 68 70 0.9444 1.0000 0.9714 3.00e-41 4tt9-a2-m1-cD_4tt9-a2-m1-cC
3 4yx1-a1-m1-cB 65 67 0.3611 0.4000 0.3881 9.21e-08 4yx1-a1-m1-cB_4yx1-a1-m1-cA
4 4yx1-a1-m1-cA 66 67 0.3611 0.3939 0.3881 9.22e-08 4yx1-a1-m1-cB_4yx1-a1-m1-cA
5 1yab-a3-m2-cA 85 65 0.2639 0.2235 0.2923 0.003 1yab-a3-m2-cA_1yab-a3-m2-cB
6 1yab-a3-m1-cA 85 65 0.2639 0.2235 0.2923 0.003 1yab-a3-m1-cA_1yab-a3-m2-cB
7 1yab-a3-m2-cB 87 65 0.2639 0.2184 0.2923 0.003 1yab-a3-m1-cA_1yab-a3-m2-cB, 1yab-a3-m2-cA_1yab-a3-m2-cB
8 4yxb-a1-m1-cA 157 65 0.2778 0.1274 0.3077 0.006 4yxb-a1-m1-cA_4yxb-a1-m1-cB
9 4yxb-a1-m1-cB 169 65 0.2778 0.1183 0.3077 0.007 4yxb-a1-m1-cA_4yxb-a1-m1-cB
10 3uep-a1-m1-cB 85 67 0.2361 0.2000 0.2537 0.078 3uep-a1-m1-cA_3uep-a1-m1-cB
11 3uep-a1-m1-cA 85 67 0.2361 0.2000 0.2537 0.078 3uep-a1-m1-cA_3uep-a1-m1-cB
12 6ms3-a1-m1-cB 511 48 0.2083 0.0294 0.3125 3.2 6ms3-a1-m1-cB_6ms3-a1-m1-cA
13 6ms3-a1-m1-cA 512 48 0.2083 0.0293 0.3125 3.2 6ms3-a1-m1-cB_6ms3-a1-m1-cA
14 3kfw-a1-m4-cX 223 36 0.1806 0.0583 0.3611 9.9 3kfw-a1-m1-cX_3kfw-a1-m4-cX, 3kfw-a1-m2-cX_3kfw-a1-m4-cX
15 3kfw-a1-m2-cX 223 36 0.1806 0.0583 0.3611 9.9 3kfw-a1-m2-cX_3kfw-a1-m4-cX
16 3kfw-a1-m1-cX 223 36 0.1806 0.0583 0.3611 9.9 3kfw-a1-m1-cX_3kfw-a1-m4-cX

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Reference:
Jacob Schwartz et al.

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