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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM
YGWHKVQDVKSGSMLSNNDSRWEFENE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1fbs-a1-m1-cB 90 87 1.0000 0.9667 1.0000 9.11e-61 1fbs-a1-m1-cA_1fbs-a1-m1-cB
2 1fbs-a1-m1-cA 87 87 1.0000 1.0000 1.0000 1.17e-60 1fbs-a1-m1-cA_1fbs-a1-m1-cB
3 3hts-a1-m2-cB 82 87 0.8851 0.9390 0.8851 3.89e-50 3hts-a1-m1-cB_3hts-a1-m2-cB
4 3hts-a1-m1-cB 82 87 0.8851 0.9390 0.8851 3.89e-50 3hts-a1-m1-cB_3hts-a1-m2-cB
5 5d8l-a2-m1-cH 106 86 0.4828 0.3962 0.4884 2.28e-26 5d8l-a2-m1-cF_5d8l-a2-m1-cH
6 7dcu-a1-m1-cB 102 72 0.4483 0.3824 0.5417 8.80e-25 7dcu-a1-m1-cC_7dcu-a1-m1-cB
7 7dcs-a2-m1-cE 105 86 0.4713 0.3905 0.4767 9.98e-25 7dcs-a2-m1-cF_7dcs-a2-m1-cE
8 5d8l-a2-m1-cF 98 74 0.4368 0.3878 0.5135 2.23e-24 5d8l-a2-m1-cF_5d8l-a2-m1-cH
9 6j6w-a1-m2-cB 94 70 0.4368 0.4043 0.5429 4.79e-24 6j6w-a1-m1-cA_6j6w-a1-m2-cB, 6j6w-a1-m2-cA_6j6w-a1-m2-cB
10 6j6w-a1-m2-cA 94 70 0.4368 0.4043 0.5429 4.79e-24 6j6w-a1-m2-cA_6j6w-a1-m2-cB
11 6j6w-a1-m1-cA 94 70 0.4368 0.4043 0.5429 4.79e-24 6j6w-a1-m1-cA_6j6w-a1-m2-cB
12 7dcu-a1-m1-cC 92 70 0.4368 0.4130 0.5429 1.04e-23 7dcu-a1-m1-cC_7dcu-a1-m1-cB
13 7dcs-a2-m1-cF 93 66 0.4368 0.4086 0.5758 2.29e-22 7dcs-a2-m1-cF_7dcs-a2-m1-cE
14 5d5u-a1-m2-cB 100 66 0.4368 0.3800 0.5758 2.56e-22 5d5u-a1-m1-cB_5d5u-a1-m2-cB
15 5d5u-a1-m1-cB 100 66 0.4368 0.3800 0.5758 2.56e-22 5d5u-a1-m1-cB_5d5u-a1-m2-cB
16 5hdg-a2-m2-cA 94 66 0.4368 0.4043 0.5758 2.59e-22 5hdg-a2-m1-cA_5hdg-a2-m2-cA
17 5hdg-a2-m1-cA 94 66 0.4368 0.4043 0.5758 2.59e-22 5hdg-a2-m1-cA_5hdg-a2-m2-cA
18 5d5x-a1-m1-cB 99 65 0.4023 0.3535 0.5385 2.10e-19 5d5x-a1-m1-cE_5d5x-a1-m1-cB
19 5d5x-a1-m1-cE 98 65 0.4023 0.3571 0.5385 2.26e-19 5d5x-a1-m1-cE_5d5x-a1-m1-cB
20 6ph4-a1-m1-cB 460 41 0.1609 0.0304 0.3415 0.63 6ph4-a1-m1-cA_6ph4-a1-m1-cB
21 5epv-a3-m1-cA 216 50 0.1839 0.0741 0.3200 0.65 5epv-a3-m1-cB_5epv-a3-m1-cA
22 2ef0-a2-m3-cA 287 28 0.1149 0.0348 0.3571 2.3 2ef0-a2-m2-cA_2ef0-a2-m3-cA
23 2ef0-a2-m2-cA 287 28 0.1149 0.0348 0.3571 2.3 2ef0-a2-m2-cA_2ef0-a2-m3-cA

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Reference:
Jacob Schwartz et al.

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