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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
PAHELRYSIYRDLWERGFFLSAAGKFGGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDL
VAAGRLGTSVRKTLLLCSPQPDGKVVYTSLQWASL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6z9u-a1-m1-cC 95 95 1.0000 1.0000 1.0000 1.52e-67 6z9u-a1-m1-cA_6z9u-a1-m1-cC
2 6z9u-a1-m1-cA 88 94 0.9263 1.0000 0.9362 6.71e-60 6z9u-a1-m1-cA_6z9u-a1-m1-cC
3 3ajv-a1-m1-cD 178 92 0.4000 0.2135 0.4130 1.17e-15 3ajv-a1-m1-cD_3ajv-a1-m1-cB
4 3ajv-a1-m1-cB 180 92 0.4000 0.2111 0.4130 1.19e-15 3ajv-a1-m1-cD_3ajv-a1-m1-cB
5 5x89-a1-m2-cA 337 97 0.3474 0.0979 0.3402 1.13e-13 5x89-a1-m1-cA_5x89-a1-m2-cA
6 5x89-a1-m2-cA 337 39 0.1474 0.0415 0.3590 0.13 5x89-a1-m1-cA_5x89-a1-m2-cA
7 5x89-a1-m1-cA 337 97 0.3474 0.0979 0.3402 1.13e-13 5x89-a1-m1-cA_5x89-a1-m2-cA
8 5x89-a1-m1-cA 337 39 0.1474 0.0415 0.3590 0.13 5x89-a1-m1-cA_5x89-a1-m2-cA
9 1a79-a1-m1-cD 171 92 0.2842 0.1579 0.2935 2.39e-11 1a79-a1-m1-cA_1a79-a1-m1-cD, 1a79-a1-m1-cC_1a79-a1-m1-cD
10 1a79-a1-m1-cC 171 92 0.2842 0.1579 0.2935 2.39e-11 1a79-a1-m1-cA_1a79-a1-m1-cC, 1a79-a1-m1-cC_1a79-a1-m1-cD
11 1a79-a1-m1-cA 171 92 0.2842 0.1579 0.2935 2.39e-11 1a79-a1-m1-cA_1a79-a1-m1-cC, 1a79-a1-m1-cA_1a79-a1-m1-cD
12 2cv8-a2-m2-cB 176 88 0.3053 0.1648 0.3295 6.39e-10 2cv8-a2-m2-cA_2cv8-a2-m2-cB
13 2zyz-a1-m1-cD 183 90 0.3263 0.1694 0.3444 4.51e-08 2zyz-a1-m1-cB_2zyz-a1-m1-cD
14 2zyz-a1-m1-cB 183 90 0.3263 0.1694 0.3444 4.51e-08 2zyz-a1-m1-cB_2zyz-a1-m1-cD
15 1r11-a1-m1-cB 303 75 0.3158 0.0990 0.4000 7.85e-07 1r11-a1-m1-cA_1r11-a1-m1-cB
16 1r11-a1-m1-cA 303 75 0.3158 0.0990 0.4000 7.85e-07 1r11-a1-m1-cA_1r11-a1-m1-cB
17 3iey-a2-m2-cA 147 98 0.2526 0.1633 0.2449 6.85e-06 3iey-a2-m1-cA_3iey-a2-m2-cA
18 3iey-a2-m1-cA 147 98 0.2526 0.1633 0.2449 6.85e-06 3iey-a2-m1-cA_3iey-a2-m2-cA
19 4fz2-a1-m1-cB 386 80 0.2316 0.0570 0.2750 4.30e-05 4fz2-a1-m1-cA_4fz2-a1-m1-cB
20 4fz2-a1-m1-cA 386 80 0.2316 0.0570 0.2750 4.30e-05 4fz2-a1-m1-cA_4fz2-a1-m1-cB
21 2cv8-a2-m2-cA 156 89 0.2737 0.1667 0.2921 1.85e-04 2cv8-a2-m1-cA_2cv8-a2-m2-cA, 2cv8-a2-m2-cA_2cv8-a2-m2-cB
22 2cv8-a2-m1-cA 156 89 0.2737 0.1667 0.2921 1.85e-04 2cv8-a2-m1-cA_2cv8-a2-m2-cA
23 2ohc-a1-m1-cA 289 70 0.2316 0.0761 0.3143 0.006 2ohc-a1-m1-cB_2ohc-a1-m1-cA
24 2ohc-a1-m1-cB 288 70 0.2316 0.0764 0.3143 0.007 2ohc-a1-m1-cB_2ohc-a1-m1-cA
25 1a4e-a1-m1-cD 488 64 0.2105 0.0410 0.3125 2.1 1a4e-a1-m1-cA_1a4e-a1-m1-cD, 1a4e-a1-m1-cB_1a4e-a1-m1-cD, 1a4e-a1-m1-cC_1a4e-a1-m1-cD
26 1a4e-a1-m1-cC 488 64 0.2105 0.0410 0.3125 2.1 1a4e-a1-m1-cC_1a4e-a1-m1-cD
27 1a4e-a1-m1-cB 488 64 0.2105 0.0410 0.3125 2.1 1a4e-a1-m1-cB_1a4e-a1-m1-cD
28 1a4e-a1-m1-cA 488 64 0.2105 0.0410 0.3125 2.1 1a4e-a1-m1-cA_1a4e-a1-m1-cD
29 5h80-a1-m1-cB 426 44 0.1474 0.0329 0.3182 7.8 5h80-a1-m1-cB_5h80-a1-m1-cA
30 5h80-a1-m1-cA 430 44 0.1474 0.0326 0.3182 8.3 5h80-a1-m1-cB_5h80-a1-m1-cA
31 2ec2-a3-m1-cE 129 48 0.1368 0.1008 0.2708 9.3 2ec2-a3-m1-cE_2ec2-a3-m1-cF

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Reference:
Jacob Schwartz et al.

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