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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=42)
PAKAAFDSLQASATEYIGYAWAMVVVIVGATIGIKLFKKFTS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1ifj-a1-m9-cA 50 42 1.0000 0.8400 1.0000 3.19e-24 1ifj-a1-m4-cA_1ifj-a1-m9-cA
2 1ifj-a1-m4-cA 50 42 1.0000 0.8400 1.0000 3.19e-24 1ifj-a1-m4-cA_1ifj-a1-m9-cA
3 1ifi-a1-m9-cA 50 42 1.0000 0.8400 1.0000 3.19e-24 1ifi-a1-m20-cA_1ifi-a1-m9-cA, 1ifi-a1-m3-cA_1ifi-a1-m9-cA
4 1ifi-a1-m3-cA 50 42 1.0000 0.8400 1.0000 3.19e-24 1ifi-a1-m3-cA_1ifi-a1-m9-cA
5 1ifi-a1-m20-cA 50 42 1.0000 0.8400 1.0000 3.19e-24 1ifi-a1-m20-cA_1ifi-a1-m9-cA
6 2hi5-a1-m9-cA 42 42 1.0000 1.0000 1.0000 3.53e-24 2hi5-a1-m3-cA_2hi5-a1-m9-cA
7 2hi5-a1-m3-cA 42 42 1.0000 1.0000 1.0000 3.53e-24 2hi5-a1-m3-cA_2hi5-a1-m9-cA
8 8b3q-a1-m1-cEkE 46 42 0.9762 0.8913 0.9762 3.31e-23 8b3q-a1-m1-cAiA_8b3q-a1-m1-cEkE
9 8b3q-a1-m1-cAiA 46 42 0.9762 0.8913 0.9762 3.31e-23 8b3q-a1-m1-cAiA_8b3q-a1-m1-cEkE
10 8b3p-a1-m1-czzz 46 42 0.9762 0.8913 0.9762 3.31e-23 8b3p-a1-m1-crrr_8b3p-a1-m1-czzz
11 8b3p-a1-m1-crrr 46 42 0.9762 0.8913 0.9762 3.31e-23 8b3p-a1-m1-crrr_8b3p-a1-m1-czzz

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Reference:
Jacob Schwartz et al.

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