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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=72)
PAVKHALGQFNQVVTMFEKATAAASCNWITCLESLAASSAACAAALGELGLDIPLDLACI
ASASAQGCEGCF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7r6u-a1-m1-cB 74 72 1.0000 0.9730 1.0000 2.45e-46 7r6u-a1-m1-cA_7r6u-a1-m1-cB
2 7r6u-a1-m1-cA 72 72 1.0000 1.0000 1.0000 2.88e-46 7r6u-a1-m1-cA_7r6u-a1-m1-cB
3 2jv7-a1-m1-cB 78 75 0.5139 0.4744 0.4933 3.69e-09 2jv7-a1-m1-cA_2jv7-a1-m1-cB
4 2jv7-a1-m1-cA 78 75 0.5139 0.4744 0.4933 3.69e-09 2jv7-a1-m1-cA_2jv7-a1-m1-cB
5 7r79-a2-m1-cC 77 75 0.5278 0.4935 0.5067 8.44e-09 7r79-a2-m1-cD_7r79-a2-m1-cC
6 7r79-a2-m1-cD 76 75 0.5278 0.5000 0.5067 9.61e-09 7r79-a2-m1-cD_7r79-a2-m1-cC
7 3nkz-a1-m1-cA 93 25 0.1111 0.0860 0.3200 0.88 3nkz-a1-m1-cC_3nkz-a1-m1-cA, 3nkz-a1-m1-cD_3nkz-a1-m1-cA
8 3nkz-a3-m1-cD 92 25 0.1111 0.0870 0.3200 0.90 3nkz-a3-m1-cC_3nkz-a3-m1-cD
9 3nkz-a1-m1-cD 92 25 0.1111 0.0870 0.3200 0.90 3nkz-a1-m1-cD_3nkz-a1-m1-cA
10 3nkz-a3-m1-cC 91 25 0.1111 0.0879 0.3200 0.92 3nkz-a3-m1-cC_3nkz-a3-m1-cD
11 3nkz-a1-m1-cC 91 25 0.1111 0.0879 0.3200 0.92 3nkz-a1-m1-cC_3nkz-a1-m1-cA
12 6v8p-a1-m1-cE 197 39 0.1806 0.0660 0.3333 4.0 6v8p-a1-m1-cD_6v8p-a1-m1-cE
13 6du6-a1-m1-cD 505 33 0.1528 0.0218 0.3333 9.1 6du6-a1-m1-cA_6du6-a1-m1-cD, 6du6-a1-m1-cD_6du6-a1-m1-cB
14 6du6-a1-m1-cA 503 33 0.1528 0.0219 0.3333 9.2 6du6-a1-m1-cA_6du6-a1-m1-cD
15 6du6-a1-m1-cB 509 33 0.1528 0.0216 0.3333 9.7 6du6-a1-m1-cD_6du6-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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