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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
PETNETLKLIGSDKVQGTAVYGPDGEKIGSIERVIEKVSGRVSYAVLSFGGFLGIGDDHY
PLPWPALKYNVELGGYQVVTVDQLERAP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3htr-a1-m1-cB 88 88 1.0000 1.0000 1.0000 5.47e-60 3htr-a1-m1-cB_3htr-a1-m1-cA
2 3htr-a1-m1-cA 96 88 1.0000 0.9167 1.0000 1.28e-59 3htr-a1-m1-cB_3htr-a1-m1-cA
3 2iii-a1-m2-cA 119 29 0.1364 0.1008 0.4138 2.3 2iii-a1-m1-cA_2iii-a1-m2-cA
4 2iii-a1-m1-cA 119 29 0.1364 0.1008 0.4138 2.3 2iii-a1-m1-cA_2iii-a1-m2-cA
5 7sr6-a2-m1-cF 566 65 0.2159 0.0336 0.2923 2.3 7sr6-a2-m1-cG_7sr6-a2-m1-cF
6 7sr6-a2-m1-cG 432 65 0.2159 0.0440 0.2923 2.6 7sr6-a2-m1-cG_7sr6-a2-m1-cF
7 2ihy-a1-m1-cA 238 46 0.1932 0.0714 0.3696 4.2 2ihy-a1-m1-cA_2ihy-a1-m1-cB
8 2ihy-a1-m1-cB 251 46 0.1932 0.0677 0.3696 4.3 2ihy-a1-m1-cA_2ihy-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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