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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
PGNPLEAVVFEERDGNAVLNLLFSLRGTKPSSLSRAVKVFETFEAKIHHLETRPAQRPLA
GSPHLEYFVRFEVPSGDLAALLSSVRRVSDDVRSA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2mda-a1-m1-cB 95 95 1.0000 1.0000 1.0000 2.08e-64 2mda-a1-m1-cA_2mda-a1-m1-cB
2 2mda-a1-m1-cA 95 95 1.0000 1.0000 1.0000 2.08e-64 2mda-a1-m1-cA_2mda-a1-m1-cB
3 2jlp-a2-m1-cC 167 76 0.2737 0.1557 0.3421 0.19 2jlp-a2-m1-cC_2jlp-a2-m1-cD
4 2jlp-a2-m1-cD 169 76 0.2737 0.1538 0.3421 0.20 2jlp-a2-m1-cC_2jlp-a2-m1-cD
5 4dzi-a2-m1-cD 382 72 0.2000 0.0497 0.2639 1.7 4dzi-a2-m1-cB_4dzi-a2-m1-cD
6 4dzi-a2-m1-cB 382 72 0.2000 0.0497 0.2639 1.7 4dzi-a2-m1-cB_4dzi-a2-m1-cD
7 3jyg-a3-m2-cF 178 25 0.1263 0.0674 0.4800 2.6 3jyg-a3-m1-cA_3jyg-a3-m2-cF, 3jyg-a3-m2-cD_3jyg-a3-m2-cF
8 3jyg-a3-m2-cD 178 25 0.1263 0.0674 0.4800 2.6 3jyg-a3-m2-cD_3jyg-a3-m2-cF
9 3jyg-a3-m1-cA 178 25 0.1263 0.0674 0.4800 2.6 3jyg-a3-m1-cA_3jyg-a3-m2-cF
10 2xlf-a1-m1-cB 225 37 0.1158 0.0489 0.2973 8.3 2xlf-a1-m1-cA_2xlf-a1-m1-cB
11 2xlf-a1-m1-cA 225 37 0.1158 0.0489 0.2973 8.3 2xlf-a1-m1-cA_2xlf-a1-m1-cB
12 6rla-a1-m1-cB 2750 57 0.2105 0.0073 0.3509 9.5 6rla-a1-m1-cA_6rla-a1-m1-cB
13 6rla-a1-m1-cA 2750 57 0.2105 0.0073 0.3509 9.5 6rla-a1-m1-cA_6rla-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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