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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=20)
PGPGPGPGPGPGPGPGPGPG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3b2c-a3-m1-cI 20 20 1.0000 1.0000 1.0000 0.015 3b2c-a3-m1-cG_3b2c-a3-m1-cI
2 3b2c-a3-m1-cG 20 20 1.0000 1.0000 1.0000 0.015 3b2c-a3-m1-cG_3b2c-a3-m1-cI
3 3b2c-a2-m1-cE 20 20 1.0000 1.0000 1.0000 0.015 3b2c-a2-m1-cD_3b2c-a2-m1-cE
4 3b2c-a2-m1-cD 20 20 1.0000 1.0000 1.0000 0.015 3b2c-a2-m1-cD_3b2c-a2-m1-cE
5 1ei8-a3-m1-cF 20 20 1.0000 1.0000 1.0000 0.015 1ei8-a3-m1-cD_1ei8-a3-m1-cF
6 1ei8-a3-m1-cE 20 20 1.0000 1.0000 1.0000 0.015 1ei8-a3-m1-cB_1ei8-a3-m1-cE
7 1ei8-a3-m1-cD 20 20 1.0000 1.0000 1.0000 0.015 1ei8-a3-m1-cD_1ei8-a3-m1-cF
8 1ei8-a3-m1-cB 20 20 1.0000 1.0000 1.0000 0.015 1ei8-a3-m1-cA_1ei8-a3-m1-cB, 1ei8-a3-m1-cB_1ei8-a3-m1-cE
9 1ei8-a3-m1-cA 20 20 1.0000 1.0000 1.0000 0.015 1ei8-a3-m1-cA_1ei8-a3-m1-cB

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Reference:
Jacob Schwartz et al.

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