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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=22)
PGPGQRGREGPMGPRGPGPGPG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7f01-a1-m1-cC 22 22 1.0000 1.0000 1.0000 1.08e-06 7f01-a1-m1-cA_7f01-a1-m1-cC, 7f01-a1-m1-cB_7f01-a1-m1-cC
2 7f01-a1-m1-cB 22 22 1.0000 1.0000 1.0000 1.08e-06 7f01-a1-m1-cB_7f01-a1-m1-cC
3 7f01-a1-m1-cA 22 22 1.0000 1.0000 1.0000 1.08e-06 7f01-a1-m1-cA_7f01-a1-m1-cC
4 8dve-a1-m1-cG 3944 12 0.3636 0.0020 0.6667 7.8 8dve-a1-m1-cJ_8dve-a1-m1-cG
5 8dve-a1-m1-cJ 3943 12 0.3636 0.0020 0.6667 7.8 8dve-a1-m1-cJ_8dve-a1-m1-cG
6 6x35-a1-m1-cK 3801 12 0.3636 0.0021 0.6667 7.8 6x35-a1-m1-cH_6x35-a1-m1-cK
7 6x35-a1-m1-cH 3801 12 0.3636 0.0021 0.6667 7.8 6x35-a1-m1-cH_6x35-a1-m1-cK
8 6w1n-a1-m1-cH 3719 12 0.3636 0.0022 0.6667 7.8 6w1n-a1-m1-cF_6w1n-a1-m1-cH
9 6w1n-a1-m1-cF 3719 12 0.3636 0.0022 0.6667 7.8 6w1n-a1-m1-cF_6w1n-a1-m1-cH
10 6x34-a1-m1-cH 3715 12 0.3636 0.0022 0.6667 7.8 6x34-a1-m1-cF_6x34-a1-m1-cH
11 6x34-a1-m1-cF 3715 12 0.3636 0.0022 0.6667 7.8 6x34-a1-m1-cF_6x34-a1-m1-cH
12 3j8h-a1-m1-cG 3660 12 0.3636 0.0022 0.6667 7.8 3j8h-a1-m1-cE_3j8h-a1-m1-cG
13 3j8h-a1-m1-cE 3660 12 0.3636 0.0022 0.6667 7.8 3j8h-a1-m1-cE_3j8h-a1-m1-cG
14 5j8v-a1-m1-cD 3453 12 0.3636 0.0023 0.6667 7.8 5j8v-a1-m1-cC_5j8v-a1-m1-cD
15 5j8v-a1-m1-cC 3453 12 0.3636 0.0023 0.6667 7.8 5j8v-a1-m1-cC_5j8v-a1-m1-cD
16 7m6a-a1-m1-cI 4306 12 0.3636 0.0019 0.6667 9.1 7m6a-a1-m1-cG_7m6a-a1-m1-cI
17 7m6a-a1-m1-cG 4306 12 0.3636 0.0019 0.6667 9.1 7m6a-a1-m1-cG_7m6a-a1-m1-cI
18 7m6l-a1-m1-cI 4299 12 0.3636 0.0019 0.6667 9.2 7m6l-a1-m1-cG_7m6l-a1-m1-cI
19 7m6l-a1-m1-cG 4299 12 0.3636 0.0019 0.6667 9.2 7m6l-a1-m1-cG_7m6l-a1-m1-cI
20 6wot-a1-m1-cD 4197 12 0.3636 0.0019 0.6667 9.9 6wot-a1-m1-cB_6wot-a1-m1-cD, 6wot-a1-m1-cC_6wot-a1-m1-cD
21 6wot-a1-m1-cC 4197 12 0.3636 0.0019 0.6667 9.9 6wot-a1-m1-cC_6wot-a1-m1-cD
22 6wot-a1-m1-cB 4197 12 0.3636 0.0019 0.6667 9.9 6wot-a1-m1-cB_6wot-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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