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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
PGSGTMLPVFCVVEHEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKW
NPVPLSYVTDAPDATVADMLQDVYHVVTLKIQLH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4q2j-a1-m1-cB 94 94 1.0000 1.0000 1.0000 1.17e-66 4q2j-a1-m1-cB_4q2j-a1-m1-cD
2 4q2j-a1-m1-cD 169 95 1.0000 0.5562 0.9895 3.18e-64 4q2j-a1-m1-cB_4q2j-a1-m1-cD
3 4q2j-a1-m1-cA 169 95 1.0000 0.5562 0.9895 3.66e-64 4q2j-a1-m1-cC_4q2j-a1-m1-cA
4 3tuo-a1-m1-cA 104 104 1.0000 0.9038 0.9038 2.23e-63 3tuo-a1-m1-cD_3tuo-a1-m1-cA
5 4q2j-a1-m1-cC 92 93 0.9787 1.0000 0.9892 4.85e-63 4q2j-a1-m1-cC_4q2j-a1-m1-cA
6 3tuo-a1-m1-cC 93 93 0.9787 0.9892 0.9892 5.17e-63 3tuo-a1-m1-cD_3tuo-a1-m1-cC
7 3tuo-a1-m1-cD 91 92 0.9574 0.9890 0.9783 5.64e-61 3tuo-a1-m1-cD_3tuo-a1-m1-cA, 3tuo-a1-m1-cD_3tuo-a1-m1-cC
8 6r8f-a1-m1-cD 230 76 0.2021 0.0826 0.2500 1.7 6r8f-a1-m1-cB_6r8f-a1-m1-cD
9 6r8f-a1-m1-cB 230 76 0.2021 0.0826 0.2500 1.7 6r8f-a1-m1-cB_6r8f-a1-m1-cD
10 7ehe-a1-m1-cA 589 48 0.1596 0.0255 0.3125 1.8 7ehe-a1-m1-cB_7ehe-a1-m1-cA
11 7ehe-a1-m1-cB 581 48 0.1596 0.0258 0.3125 2.1 7ehe-a1-m1-cB_7ehe-a1-m1-cA
12 6l85-a1-m1-cA 400 49 0.1702 0.0400 0.3265 3.3 6l85-a1-m1-cA_6l85-a1-m1-cB
13 6l85-a1-m1-cB 401 49 0.1702 0.0399 0.3265 3.3 6l85-a1-m1-cA_6l85-a1-m1-cB
14 1w7c-a1-m2-cA 736 49 0.1809 0.0231 0.3469 6.4 1w7c-a1-m1-cA_1w7c-a1-m2-cA
15 1w7c-a1-m1-cA 736 49 0.1809 0.0231 0.3469 6.4 1w7c-a1-m1-cA_1w7c-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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