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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
PHRYKPGTLALREIRKYQKSTQLLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASE
AYLVQLFEDTNLCAIHARRVTIMPRDMQLARRLRREG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5ay8-a1-m1-cA 97 97 1.0000 1.0000 1.0000 1.15e-66 5ay8-a1-m1-cE_5ay8-a1-m1-cA
2 5ay8-a1-m1-cE 96 96 0.9897 1.0000 1.0000 1.20e-65 5ay8-a1-m1-cE_5ay8-a1-m1-cA
3 8f86-a1-m1-cA 107 95 0.7835 0.7103 0.8000 4.50e-52 8f86-a1-m1-cE_8f86-a1-m1-cA
4 4jjn-a1-m1-cA 98 96 0.7732 0.7653 0.7812 3.16e-51 4jjn-a1-m1-cE_4jjn-a1-m1-cA
5 7z0o-a1-m1-cC 97 96 0.7732 0.7732 0.7812 3.38e-51 7z0o-a1-m1-cA_7z0o-a1-m1-cC
6 8f86-a1-m1-cE 95 94 0.7732 0.7895 0.7979 1.16e-50 8f86-a1-m1-cE_8f86-a1-m1-cA
7 4jjn-a1-m1-cE 96 95 0.7629 0.7708 0.7789 4.33e-50 4jjn-a1-m1-cE_4jjn-a1-m1-cA
8 7z0o-a1-m1-cA 94 93 0.7526 0.7766 0.7849 6.38e-50 7z0o-a1-m1-cA_7z0o-a1-m1-cC
9 5zbx-a1-m1-cA 95 96 0.6804 0.6947 0.6875 5.39e-43 5zbx-a1-m1-cA_5zbx-a1-m1-cE
10 5zbx-a1-m1-cE 101 98 0.6804 0.6535 0.6735 1.30e-42 5zbx-a1-m1-cA_5zbx-a1-m1-cE
11 6kxv-a1-m1-cA 94 94 0.6392 0.6596 0.6596 1.08e-39 6kxv-a1-m1-cA_6kxv-a1-m1-cE
12 6kxv-a1-m1-cE 95 94 0.6392 0.6526 0.6596 1.11e-39 6kxv-a1-m1-cA_6kxv-a1-m1-cE
13 7y7i-a1-m1-cE 97 96 0.6289 0.6289 0.6354 6.52e-39 7y7i-a1-m1-cE_7y7i-a1-m1-cA
14 7y7i-a1-m1-cA 102 96 0.6289 0.5980 0.6354 8.63e-39 7y7i-a1-m1-cE_7y7i-a1-m1-cA
15 6uph-a1-m1-cE 97 92 0.6082 0.6082 0.6413 1.24e-35 6uph-a1-m1-cA_6uph-a1-m1-cE
16 6uph-a1-m1-cA 93 89 0.5979 0.6237 0.6517 1.19e-34 6uph-a1-m1-cA_6uph-a1-m1-cE
17 2yfw-a2-m1-cE 88 85 0.5773 0.6364 0.6588 3.26e-33 2yfw-a2-m1-cC_2yfw-a2-m1-cE
18 7d69-a1-m1-cE 99 93 0.5464 0.5354 0.5699 3.55e-33 7d69-a1-m1-cA_7d69-a1-m1-cE
19 7d69-a1-m1-cA 90 85 0.5155 0.5556 0.5882 1.70e-30 7d69-a1-m1-cA_7d69-a1-m1-cE
20 2yfw-a2-m1-cC 71 74 0.4742 0.6479 0.6216 1.33e-25 2yfw-a2-m1-cC_2yfw-a2-m1-cE
21 6xwt-a1-m1-cC 74 68 0.3196 0.4189 0.4559 3.15e-10 6xwt-a1-m1-cA_6xwt-a1-m1-cC
22 6xwt-a1-m1-cA 74 68 0.3196 0.4189 0.4559 3.15e-10 6xwt-a1-m1-cA_6xwt-a1-m1-cC
23 7lv9-a1-m1-cE 102 79 0.2165 0.2059 0.2658 2.06e-04 7lv9-a1-m1-cA_7lv9-a1-m1-cE
24 7lv9-a1-m1-cA 102 79 0.2165 0.2059 0.2658 2.06e-04 7lv9-a1-m1-cA_7lv9-a1-m1-cE
25 6m2m-a1-m1-cB 86 68 0.1546 0.1744 0.2206 0.45 6m2m-a1-m1-cB_6m2m-a1-m1-cL
26 6m2m-a1-m1-cL 89 68 0.1546 0.1685 0.2206 0.49 6m2m-a1-m1-cB_6m2m-a1-m1-cL

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Reference:
Jacob Schwartz et al.

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