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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
PHSPEDKKRILTRVRRIRGQVEALERALESGEPCLAILQQIAAVRGASNGLMSEMVEIHL
KDHLVSGETTPDQRAVRMAEIGHLLRAY

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5lcy-a1-m1-cD 88 88 1.0000 1.0000 1.0000 6.17e-60 5lcy-a1-m1-cA_5lcy-a1-m1-cD, 5lcy-a1-m1-cC_5lcy-a1-m1-cD
2 5lcy-a1-m1-cC 88 88 1.0000 1.0000 1.0000 6.17e-60 5lcy-a1-m1-cC_5lcy-a1-m1-cD
3 5lcy-a1-m1-cA 88 88 1.0000 1.0000 1.0000 6.17e-60 5lcy-a1-m1-cA_5lcy-a1-m1-cD
4 5lbm-a1-m1-cD 89 88 0.5000 0.4944 0.5000 3.98e-24 5lbm-a1-m1-cA_5lbm-a1-m1-cD, 5lbm-a1-m1-cB_5lbm-a1-m1-cD, 5lbm-a1-m1-cC_5lbm-a1-m1-cD
5 5lbm-a1-m1-cC 89 88 0.5000 0.4944 0.5000 3.98e-24 5lbm-a1-m1-cC_5lbm-a1-m1-cD
6 5lbm-a1-m1-cB 82 81 0.4545 0.4878 0.4938 5.11e-20 5lbm-a1-m1-cA_5lbm-a1-m1-cB, 5lbm-a1-m1-cB_5lbm-a1-m1-cD
7 5lbm-a1-m1-cA 82 81 0.4545 0.4878 0.4938 5.11e-20 5lbm-a1-m1-cA_5lbm-a1-m1-cB, 5lbm-a1-m1-cA_5lbm-a1-m1-cD
8 4m1p-a2-m9-cA 96 66 0.2386 0.2188 0.3182 2.85e-06 4m1p-a2-m12-cA_4m1p-a2-m9-cA
9 4m1p-a2-m12-cA 96 66 0.2386 0.2188 0.3182 2.85e-06 4m1p-a2-m12-cA_4m1p-a2-m9-cA
10 4m1p-a1-m4-cA 96 66 0.2386 0.2188 0.3182 2.85e-06 4m1p-a1-m3-cA_4m1p-a1-m4-cA
11 4m1p-a1-m3-cA 96 66 0.2386 0.2188 0.3182 2.85e-06 4m1p-a1-m3-cA_4m1p-a1-m4-cA
12 5fmn-a1-m2-cB 89 61 0.2045 0.2022 0.2951 8.46e-06 5fmn-a1-m1-cA_5fmn-a1-m2-cB, 5fmn-a1-m2-cA_5fmn-a1-m2-cB
13 4adz-a1-m2-cB 90 81 0.3068 0.3000 0.3333 1.23e-05 4adz-a1-m2-cA_4adz-a1-m2-cB
14 4adz-a1-m2-cA 90 81 0.3068 0.3000 0.3333 1.23e-05 4adz-a1-m2-cA_4adz-a1-m2-cB
15 4uig-a1-m4-cA 91 81 0.3068 0.2967 0.3333 1.47e-05 4uig-a1-m3-cA_4uig-a1-m4-cA
16 4uig-a1-m3-cA 91 81 0.3068 0.2967 0.3333 1.47e-05 4uig-a1-m3-cA_4uig-a1-m4-cA
17 5fmn-a1-m2-cA 86 62 0.2159 0.2209 0.3065 1.19e-04 5fmn-a1-m2-cA_5fmn-a1-m2-cB
18 5fmn-a1-m1-cA 86 62 0.2159 0.2209 0.3065 1.19e-04 5fmn-a1-m1-cA_5fmn-a1-m2-cB
19 6ahx-a1-m2-cA 60 60 0.2386 0.3500 0.3500 4.10e-04 6ahx-a1-m1-cA_6ahx-a1-m2-cA
20 6ahx-a1-m1-cA 60 60 0.2386 0.3500 0.3500 4.10e-04 6ahx-a1-m1-cA_6ahx-a1-m2-cA
21 2hh7-a2-m4-cA 85 41 0.1591 0.1647 0.3415 7.53e-04 2hh7-a2-m1-cA_2hh7-a2-m4-cA, 2hh7-a2-m3-cA_2hh7-a2-m4-cA
22 2hh7-a2-m3-cA 85 41 0.1591 0.1647 0.3415 7.53e-04 2hh7-a2-m3-cA_2hh7-a2-m4-cA
23 2hh7-a2-m1-cA 85 41 0.1591 0.1647 0.3415 7.53e-04 2hh7-a2-m1-cA_2hh7-a2-m4-cA
24 6z6o-a1-m1-cM 656 70 0.2727 0.0366 0.3429 0.077 6z6o-a1-m1-cM_6z6o-a1-m1-cN
25 6z6o-a1-m1-cN 661 70 0.2727 0.0363 0.3429 0.077 6z6o-a1-m1-cM_6z6o-a1-m1-cN
26 7urg-a1-m1-cB 401 93 0.3750 0.0823 0.3548 0.15 7urg-a1-m1-cA_7urg-a1-m1-cB
27 7urg-a1-m1-cA 401 93 0.3750 0.0823 0.3548 0.15 7urg-a1-m1-cA_7urg-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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