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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNAL
IKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1pyo-a1-m1-cD 99 99 1.0000 1.0000 1.0000 8.30e-73 1pyo-a1-m1-cB_1pyo-a1-m1-cD
2 1pyo-a1-m1-cB 98 98 0.9899 1.0000 1.0000 4.56e-72 1pyo-a1-m1-cB_1pyo-a1-m1-cD
3 4m9r-a1-m1-cA 256 94 0.3131 0.1211 0.3298 1.99e-13 4m9r-a1-m1-cB_4m9r-a1-m1-cA
4 6pdq-a1-m1-cB 87 91 0.2626 0.2989 0.2857 1.59e-12 6pdq-a1-m1-cE_6pdq-a1-m1-cB
5 6pdq-a1-m1-cE 85 91 0.2424 0.2824 0.2637 4.78e-10 6pdq-a1-m1-cE_6pdq-a1-m1-cB
6 7jl7-a1-m1-cD 94 94 0.2424 0.2553 0.2553 4.08e-08 7jl7-a1-m1-cD_7jl7-a1-m1-cC
7 7jl7-a1-m1-cC 96 94 0.2424 0.2500 0.2553 4.44e-08 7jl7-a1-m1-cD_7jl7-a1-m1-cC
8 4jqy-a1-m1-cB 205 90 0.2323 0.1122 0.2556 5.49e-07 4jqy-a1-m1-cA_4jqy-a1-m1-cB
9 1jxq-a2-m1-cD 226 53 0.1919 0.0841 0.3585 1.38e-06 1jxq-a2-m1-cD_1jxq-a2-m1-cC
10 1jxq-a2-m1-cC 242 53 0.1919 0.0785 0.3585 1.45e-06 1jxq-a2-m1-cD_1jxq-a2-m1-cC
11 3k7e-a1-m1-cC 212 90 0.2424 0.1132 0.2667 1.55e-06 3k7e-a1-m1-cB_3k7e-a1-m1-cC
12 3sip-a2-m1-cD 100 89 0.2424 0.2400 0.2697 3.17e-06 3sip-a2-m1-cD_3sip-a2-m1-cB
13 3sip-a2-m1-cB 103 89 0.2424 0.2330 0.2697 3.31e-06 3sip-a2-m1-cD_3sip-a2-m1-cB
14 1m72-a2-m2-cC 252 89 0.2525 0.0992 0.2809 9.22e-06 1m72-a2-m1-cC_1m72-a2-m2-cC
15 1m72-a2-m1-cC 252 89 0.2525 0.0992 0.2809 9.22e-06 1m72-a2-m1-cC_1m72-a2-m2-cC
16 4m9r-a1-m1-cB 223 89 0.2727 0.1211 0.3034 1.39e-05 4m9r-a1-m1-cB_4m9r-a1-m1-cA
17 4fxo-a1-m1-cD 220 90 0.2424 0.1091 0.2667 1.75e-05 4fxo-a1-m1-cD_4fxo-a1-m1-cB
18 4fxo-a1-m1-cB 227 92 0.2525 0.1101 0.2717 1.80e-05 4fxo-a1-m1-cD_4fxo-a1-m1-cB
19 3sir-a1-m1-cA 214 34 0.1212 0.0561 0.3529 7.48e-04 3sir-a1-m1-cB_3sir-a1-m1-cA
20 4fea-a1-m1-cA 170 53 0.1515 0.0882 0.2830 0.002 4fea-a1-m1-cA_4fea-a1-m1-cB
21 4fea-a1-m1-cB 196 30 0.1111 0.0561 0.3667 0.010 4fea-a1-m1-cA_4fea-a1-m1-cB
22 3e4c-a1-m1-cB 257 87 0.2525 0.0973 0.2874 0.037 3e4c-a1-m1-cB_3e4c-a1-m1-cA
23 3e4c-a1-m1-cA 271 87 0.2525 0.0923 0.2874 0.038 3e4c-a1-m1-cB_3e4c-a1-m1-cA
24 3v6m-a3-m1-cG 204 60 0.1515 0.0735 0.2500 0.44 3v6m-a3-m1-cF_3v6m-a3-m1-cG
25 3v6m-a3-m1-cF 203 60 0.1515 0.0739 0.2500 0.47 3v6m-a3-m1-cF_3v6m-a3-m1-cG
26 3k7e-a1-m1-cB 200 56 0.1414 0.0700 0.2500 0.50 3k7e-a1-m1-cB_3k7e-a1-m1-cC
27 6w8w-a1-m1-cB 826 29 0.1313 0.0157 0.4483 0.69 6w8w-a1-m1-cB_6w8w-a1-m1-cA
28 5wy1-a1-m2-cA 1140 29 0.1313 0.0114 0.4483 0.69 5wy1-a1-m1-cA_5wy1-a1-m2-cA
29 5wy1-a1-m1-cA 1140 29 0.1313 0.0114 0.4483 0.69 5wy1-a1-m1-cA_5wy1-a1-m2-cA
30 6w8w-a1-m1-cA 828 29 0.1313 0.0157 0.4483 0.71 6w8w-a1-m1-cB_6w8w-a1-m1-cA
31 4jqy-a1-m1-cA 194 90 0.2020 0.1031 0.2222 0.98 4jqy-a1-m1-cA_4jqy-a1-m1-cB
32 6njg-a1-m2-cC 76 68 0.1818 0.2368 0.2647 1.4 6njg-a1-m1-cC_6njg-a1-m2-cC
33 6njg-a1-m1-cC 76 68 0.1818 0.2368 0.2647 1.4 6njg-a1-m1-cC_6njg-a1-m2-cC
34 6kmz-a2-m1-cd 88 87 0.1919 0.2159 0.2184 2.2 6kmz-a2-m1-cc_6kmz-a2-m1-cd
35 6kmz-a2-m1-cc 88 87 0.1919 0.2159 0.2184 2.2 6kmz-a2-m1-cc_6kmz-a2-m1-cd
36 1ud0-a4-m3-cB 79 57 0.1717 0.2152 0.2982 2.6 1ud0-a4-m1-cD_1ud0-a4-m3-cB, 1ud0-a4-m3-cB_1ud0-a4-m3-cA
37 1ud0-a4-m3-cA 81 57 0.1717 0.2099 0.2982 2.6 1ud0-a4-m1-cD_1ud0-a4-m3-cA, 1ud0-a4-m3-cA_1ud0-a4-m1-cC, 1ud0-a4-m3-cB_1ud0-a4-m3-cA
38 1ud0-a4-m1-cC 84 57 0.1717 0.2024 0.2982 2.9 1ud0-a4-m3-cA_1ud0-a4-m1-cC
39 4wz9-a1-m1-cA 882 47 0.1717 0.0193 0.3617 5.8 4wz9-a1-m1-cA_4wz9-a1-m1-cB
40 4wz9-a1-m1-cB 887 47 0.1717 0.0192 0.3617 5.9 4wz9-a1-m1-cA_4wz9-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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