Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=86)
PLAQQIKNILSLISQADAAGRMDEVRTLQLNLCQLMVEYFQGSPLAQQIKNIHSFGHQAW
AAGRLDEVLTIQENLYQLMKEYFQQS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7bww-a5-m1-cC 86 86 1.0000 1.0000 1.0000 6.88e-60 7bww-a5-m1-cC_7bww-a5-m1-cD
2 7bww-a5-m1-cD 88 86 1.0000 0.9773 1.0000 7.39e-60 7bww-a5-m1-cC_7bww-a5-m1-cD, 7bww-a5-m1-cD_7bww-a5-m1-cA
3 7bww-a5-m1-cA 90 87 1.0000 0.9556 0.9885 4.00e-58 7bww-a5-m1-cD_7bww-a5-m1-cA
4 5od9-a1-m1-cA 95 92 0.7209 0.6526 0.6739 2.78e-34 5od9-a1-m1-cB_5od9-a1-m1-cA
5 5od9-a1-m1-cA 95 45 0.3605 0.3263 0.6889 5.08e-14 5od9-a1-m1-cB_5od9-a1-m1-cA
6 5od9-a1-m1-cB 88 87 0.6977 0.6818 0.6897 6.02e-33 5od9-a1-m1-cB_5od9-a1-m1-cA
7 5od9-a1-m1-cB 88 44 0.3488 0.3409 0.6818 3.78e-13 5od9-a1-m1-cB_5od9-a1-m1-cA
8 3v1c-a1-m1-cB 47 45 0.4419 0.8085 0.8444 6.68e-22 3v1c-a1-m1-cA_3v1c-a1-m1-cB
9 3v1c-a1-m1-cB 47 43 0.4070 0.7447 0.8140 3.44e-17 3v1c-a1-m1-cA_3v1c-a1-m1-cB
10 3v1c-a1-m1-cA 46 45 0.4419 0.8261 0.8444 7.38e-22 3v1c-a1-m1-cA_3v1c-a1-m1-cB
11 3v1c-a1-m1-cA 46 43 0.4070 0.7609 0.8140 3.59e-17 3v1c-a1-m1-cA_3v1c-a1-m1-cB
12 3v1b-a1-m1-cA 46 45 0.4419 0.8261 0.8444 7.38e-22 3v1b-a1-m1-cA_3v1b-a1-m1-cB
13 3v1b-a1-m1-cA 46 43 0.4070 0.7609 0.8140 3.59e-17 3v1b-a1-m1-cA_3v1b-a1-m1-cB
14 3v1d-a4-m1-cH 48 45 0.4419 0.7917 0.8444 8.70e-22 3v1d-a4-m1-cE_3v1d-a4-m1-cH
15 3v1d-a4-m1-cH 48 43 0.4070 0.7292 0.8140 4.14e-17 3v1d-a4-m1-cE_3v1d-a4-m1-cH
16 3v1d-a4-m1-cE 48 45 0.4419 0.7917 0.8444 8.70e-22 3v1d-a4-m1-cE_3v1d-a4-m1-cH
17 3v1d-a4-m1-cE 48 43 0.4070 0.7292 0.8140 4.14e-17 3v1d-a4-m1-cE_3v1d-a4-m1-cH
18 3v1b-a1-m1-cB 48 45 0.4419 0.7917 0.8444 8.70e-22 3v1b-a1-m1-cA_3v1b-a1-m1-cB
19 3v1b-a1-m1-cB 48 43 0.4070 0.7292 0.8140 4.14e-17 3v1b-a1-m1-cA_3v1b-a1-m1-cB
20 3j6d-a1-m1-cv 148 42 0.1744 0.1014 0.3571 1.5 3j6d-a1-m1-cu_3j6d-a1-m1-cv
21 3j6d-a1-m1-cu 148 42 0.1744 0.1014 0.3571 1.5 3j6d-a1-m1-cu_3j6d-a1-m1-cv
22 4uzs-a1-m1-cB 679 19 0.1047 0.0133 0.4737 2.3 4uzs-a1-m1-cB_4uzs-a1-m1-cC
23 4uzs-a1-m1-cC 683 19 0.1047 0.0132 0.4737 2.3 4uzs-a1-m1-cB_4uzs-a1-m1-cC
24 3r2g-a2-m4-cA 323 30 0.1279 0.0341 0.3667 5.0 3r2g-a2-m2-cA_3r2g-a2-m4-cA
25 3r2g-a2-m2-cA 323 30 0.1279 0.0341 0.3667 5.0 3r2g-a2-m2-cA_3r2g-a2-m4-cA
26 6ggo-a1-m1-cA 199 37 0.1395 0.0603 0.3243 7.0 6ggo-a1-m1-cB_6ggo-a1-m1-cA

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600