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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=63)
PLIRVTLLEGRSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWFVGGRSVAER
RAS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3ry0-a1-m3-cB 63 63 1.0000 1.0000 1.0000 5.45e-38 3ry0-a1-m2-cB_3ry0-a1-m3-cB, 3ry0-a1-m3-cB_3ry0-a1-m3-cA
2 3ry0-a1-m2-cB 63 63 1.0000 1.0000 1.0000 5.45e-38 3ry0-a1-m2-cB_3ry0-a1-m3-cB
3 3ry0-a1-m3-cA 65 63 1.0000 0.9692 1.0000 5.94e-38 3ry0-a1-m3-cB_3ry0-a1-m3-cA
4 7m59-a1-m3-cB 64 59 0.3651 0.3594 0.3898 1.45e-10 7m59-a1-m2-cB_7m59-a1-m3-cB, 7m59-a1-m3-cA_7m59-a1-m3-cB
5 7m59-a1-m3-cA 64 59 0.3651 0.3594 0.3898 1.45e-10 7m59-a1-m3-cA_7m59-a1-m3-cB
6 7m59-a1-m2-cB 64 59 0.3651 0.3594 0.3898 1.45e-10 7m59-a1-m2-cB_7m59-a1-m3-cB
7 4faz-a1-m2-cC 62 56 0.3492 0.3548 0.3929 4.74e-09 4faz-a1-m1-cB_4faz-a1-m2-cC, 4faz-a1-m2-cB_4faz-a1-m2-cC
8 4faz-a1-m2-cB 62 56 0.3492 0.3548 0.3929 4.74e-09 4faz-a1-m2-cB_4faz-a1-m2-cC
9 4faz-a1-m1-cB 62 56 0.3492 0.3548 0.3929 4.74e-09 4faz-a1-m1-cB_4faz-a1-m2-cC
10 7xuy-a1-m6-cA 64 59 0.3333 0.3281 0.3559 4.75e-09 7xuy-a1-m3-cA_7xuy-a1-m6-cA, 7xuy-a1-m5-cA_7xuy-a1-m6-cA
11 7xuy-a1-m5-cA 64 59 0.3333 0.3281 0.3559 4.75e-09 7xuy-a1-m5-cA_7xuy-a1-m6-cA
12 7xuy-a1-m3-cA 64 59 0.3333 0.3281 0.3559 4.75e-09 7xuy-a1-m3-cA_7xuy-a1-m6-cA
13 3mb2-a1-m1-cE 61 58 0.4603 0.4754 0.5000 9.54e-09 3mb2-a1-m1-cA_3mb2-a1-m1-cE
14 3mb2-a1-m1-cA 61 58 0.4603 0.4754 0.5000 9.54e-09 3mb2-a1-m1-cA_3mb2-a1-m1-cE
15 2x4k-a1-m3-cB 62 54 0.3175 0.3226 0.3704 3.51e-08 2x4k-a1-m2-cB_2x4k-a1-m3-cB, 2x4k-a1-m3-cA_2x4k-a1-m3-cB
16 2x4k-a1-m3-cA 62 54 0.3175 0.3226 0.3704 3.51e-08 2x4k-a1-m3-cA_2x4k-a1-m3-cB
17 2x4k-a1-m2-cB 62 54 0.3175 0.3226 0.3704 3.51e-08 2x4k-a1-m2-cB_2x4k-a1-m3-cB
18 3abf-a1-m1-cE 61 53 0.3810 0.3934 0.4528 3.95e-08 3abf-a1-m1-cE_3abf-a1-m1-cC
19 3abf-a1-m1-cD 62 53 0.3810 0.3871 0.4528 4.32e-08 3abf-a1-m1-cD_3abf-a1-m1-cC
20 3abf-a1-m1-cC 63 53 0.3810 0.3810 0.4528 4.98e-08 3abf-a1-m1-cD_3abf-a1-m1-cC, 3abf-a1-m1-cE_3abf-a1-m1-cC
21 2opa-a1-m3-cB 61 59 0.3016 0.3115 0.3220 2.13e-06 2opa-a1-m2-cB_2opa-a1-m3-cB, 2opa-a1-m3-cA_2opa-a1-m3-cB
22 2opa-a1-m3-cA 61 59 0.3016 0.3115 0.3220 2.13e-06 2opa-a1-m3-cA_2opa-a1-m3-cB
23 2opa-a1-m2-cB 61 59 0.3016 0.3115 0.3220 2.13e-06 2opa-a1-m2-cB_2opa-a1-m3-cB
24 4fdx-a1-m3-cB 64 63 0.3333 0.3281 0.3333 2.97e-05 4fdx-a1-m2-cB_4fdx-a1-m3-cB, 4fdx-a1-m3-cA_4fdx-a1-m3-cB
25 4fdx-a1-m2-cB 64 63 0.3333 0.3281 0.3333 2.97e-05 4fdx-a1-m2-cB_4fdx-a1-m3-cB
26 1otf-a1-m1-cF 59 54 0.2540 0.2712 0.2963 4.20e-05 1otf-a1-m1-cC_1otf-a1-m1-cF
27 1otf-a1-m1-cE 59 54 0.2540 0.2712 0.2963 4.20e-05 1otf-a1-m1-cC_1otf-a1-m1-cE
28 1otf-a1-m1-cC 59 54 0.2540 0.2712 0.2963 4.20e-05 1otf-a1-m1-cC_1otf-a1-m1-cE, 1otf-a1-m1-cC_1otf-a1-m1-cF
29 6vvr-a1-m1-cC 123 54 0.2857 0.1463 0.3333 4.37e-05 6vvr-a1-m1-cB_6vvr-a1-m1-cC
30 6vvr-a1-m1-cC 123 51 0.2857 0.1463 0.3529 0.061 6vvr-a1-m1-cB_6vvr-a1-m1-cC
31 6vvr-a1-m1-cB 123 54 0.2857 0.1463 0.3333 4.37e-05 6vvr-a1-m1-cB_6vvr-a1-m1-cC
32 6vvr-a1-m1-cB 123 51 0.2857 0.1463 0.3529 0.061 6vvr-a1-m1-cB_6vvr-a1-m1-cC
33 6blm-a1-m1-cC 127 59 0.3492 0.1732 0.3729 4.95e-05 6blm-a1-m1-cA_6blm-a1-m1-cC, 6blm-a1-m1-cB_6blm-a1-m1-cC
34 6blm-a1-m1-cC 127 56 0.2698 0.1339 0.3036 1.90e-04 6blm-a1-m1-cA_6blm-a1-m1-cC, 6blm-a1-m1-cB_6blm-a1-m1-cC
35 6blm-a1-m1-cB 127 59 0.3492 0.1732 0.3729 4.95e-05 6blm-a1-m1-cA_6blm-a1-m1-cB, 6blm-a1-m1-cB_6blm-a1-m1-cC
36 6blm-a1-m1-cB 127 56 0.2698 0.1339 0.3036 1.90e-04 6blm-a1-m1-cA_6blm-a1-m1-cB, 6blm-a1-m1-cB_6blm-a1-m1-cC
37 6blm-a1-m1-cA 127 59 0.3492 0.1732 0.3729 4.95e-05 6blm-a1-m1-cA_6blm-a1-m1-cB, 6blm-a1-m1-cA_6blm-a1-m1-cC
38 6blm-a1-m1-cA 127 56 0.2698 0.1339 0.3036 1.90e-04 6blm-a1-m1-cA_6blm-a1-m1-cB, 6blm-a1-m1-cA_6blm-a1-m1-cC
39 6vvm-a1-m1-cC 123 55 0.3016 0.1545 0.3455 8.07e-05 6vvm-a1-m1-cA_6vvm-a1-m1-cC, 6vvm-a1-m1-cB_6vvm-a1-m1-cC
40 6vvm-a1-m1-cC 123 56 0.2222 0.1138 0.2500 0.12 6vvm-a1-m1-cA_6vvm-a1-m1-cC, 6vvm-a1-m1-cB_6vvm-a1-m1-cC
41 6vvm-a1-m1-cB 123 55 0.3016 0.1545 0.3455 8.07e-05 6vvm-a1-m1-cA_6vvm-a1-m1-cB, 6vvm-a1-m1-cB_6vvm-a1-m1-cC
42 6vvm-a1-m1-cB 123 56 0.2222 0.1138 0.2500 0.12 6vvm-a1-m1-cA_6vvm-a1-m1-cB, 6vvm-a1-m1-cB_6vvm-a1-m1-cC
43 6vvm-a1-m1-cA 123 55 0.3016 0.1545 0.3455 8.07e-05 6vvm-a1-m1-cA_6vvm-a1-m1-cB, 6vvm-a1-m1-cA_6vvm-a1-m1-cC
44 6vvm-a1-m1-cA 123 56 0.2222 0.1138 0.2500 0.12 6vvm-a1-m1-cA_6vvm-a1-m1-cB, 6vvm-a1-m1-cA_6vvm-a1-m1-cC
45 4fdx-a1-m3-cA 61 61 0.3175 0.3279 0.3279 1.24e-04 4fdx-a1-m3-cA_4fdx-a1-m3-cB
46 6vvn-a1-m1-cC 123 54 0.2857 0.1463 0.3333 7.57e-04 6vvn-a1-m1-cA_6vvn-a1-m1-cC, 6vvn-a1-m1-cB_6vvn-a1-m1-cC
47 6vvn-a1-m1-cC 123 56 0.2381 0.1220 0.2679 0.008 6vvn-a1-m1-cA_6vvn-a1-m1-cC, 6vvn-a1-m1-cB_6vvn-a1-m1-cC
48 6vvn-a1-m1-cB 123 54 0.2857 0.1463 0.3333 7.57e-04 6vvn-a1-m1-cA_6vvn-a1-m1-cB, 6vvn-a1-m1-cB_6vvn-a1-m1-cC
49 6vvn-a1-m1-cB 123 56 0.2381 0.1220 0.2679 0.008 6vvn-a1-m1-cA_6vvn-a1-m1-cB, 6vvn-a1-m1-cB_6vvn-a1-m1-cC
50 6vvn-a1-m1-cA 123 54 0.2857 0.1463 0.3333 7.57e-04 6vvn-a1-m1-cA_6vvn-a1-m1-cB, 6vvn-a1-m1-cA_6vvn-a1-m1-cC
51 6vvn-a1-m1-cA 123 56 0.2381 0.1220 0.2679 0.008 6vvn-a1-m1-cA_6vvn-a1-m1-cB, 6vvn-a1-m1-cA_6vvn-a1-m1-cC
52 7yxv-a1-m3-cA 121 58 0.2381 0.1240 0.2586 0.012 7yxv-a1-m2-cA_7yxv-a1-m3-cA
53 7yxv-a1-m2-cA 121 58 0.2381 0.1240 0.2586 0.012 7yxv-a1-m2-cA_7yxv-a1-m3-cA
54 7puo-a2-m1-cE 129 54 0.2540 0.1240 0.2963 0.032 7puo-a2-m1-cD_7puo-a2-m1-cE, 7puo-a2-m1-cF_7puo-a2-m1-cE
55 7puo-a2-m1-cE 129 54 0.2222 0.1085 0.2593 0.60 7puo-a2-m1-cD_7puo-a2-m1-cE, 7puo-a2-m1-cF_7puo-a2-m1-cE
56 7puo-a2-m1-cD 129 54 0.2540 0.1240 0.2963 0.032 7puo-a2-m1-cD_7puo-a2-m1-cE, 7puo-a2-m1-cF_7puo-a2-m1-cD
57 7puo-a2-m1-cD 129 54 0.2222 0.1085 0.2593 0.60 7puo-a2-m1-cD_7puo-a2-m1-cE, 7puo-a2-m1-cF_7puo-a2-m1-cD
58 7puo-a2-m1-cF 126 54 0.2540 0.1270 0.2963 0.033 7puo-a2-m1-cF_7puo-a2-m1-cD, 7puo-a2-m1-cF_7puo-a2-m1-cE
59 7puo-a2-m1-cF 126 54 0.2222 0.1111 0.2593 0.62 7puo-a2-m1-cF_7puo-a2-m1-cD, 7puo-a2-m1-cF_7puo-a2-m1-cE
60 4dh4-a1-m3-cA 114 56 0.2381 0.1316 0.2679 0.039 4dh4-a1-m2-cA_4dh4-a1-m3-cA
61 4dh4-a1-m2-cA 114 56 0.2381 0.1316 0.2679 0.039 4dh4-a1-m2-cA_4dh4-a1-m3-cA
62 5unq-a1-m1-cF 123 55 0.2381 0.1220 0.2727 0.041 5unq-a1-m1-cA_5unq-a1-m1-cF
63 5unq-a1-m1-cF 123 53 0.2698 0.1382 0.3208 0.38 5unq-a1-m1-cA_5unq-a1-m1-cF
64 5unq-a1-m1-cA 123 55 0.2381 0.1220 0.2727 0.041 5unq-a1-m1-cA_5unq-a1-m1-cF
65 5unq-a1-m1-cA 123 53 0.2698 0.1382 0.3208 0.38 5unq-a1-m1-cA_5unq-a1-m1-cF
66 3m20-a1-m2-cC 58 39 0.2222 0.2414 0.3590 0.065 3m20-a1-m1-cB_3m20-a1-m2-cC, 3m20-a1-m2-cB_3m20-a1-m2-cC
67 3m20-a1-m2-cB 58 39 0.2222 0.2414 0.3590 0.065 3m20-a1-m2-cB_3m20-a1-m2-cC
68 3m20-a1-m1-cB 58 39 0.2222 0.2414 0.3590 0.065 3m20-a1-m1-cB_3m20-a1-m2-cC
69 4u5p-a1-m1-cC 141 45 0.2063 0.0922 0.2889 0.18 4u5p-a1-m1-cB_4u5p-a1-m1-cC
70 4u5p-a1-m1-cB 141 45 0.2063 0.0922 0.2889 0.18 4u5p-a1-m1-cB_4u5p-a1-m1-cC
71 3myb-a1-m1-cB 257 60 0.3810 0.0934 0.4000 0.30 3myb-a1-m1-cB_3myb-a1-m1-cC
72 3myb-a1-m1-cC 259 60 0.3810 0.0927 0.4000 0.33 3myb-a1-m1-cB_3myb-a1-m1-cC
73 7m58-a1-m1-cC 143 57 0.2857 0.1259 0.3158 0.89 7m58-a1-m1-cB_7m58-a1-m1-cC
74 7m58-a1-m1-cB 143 57 0.2857 0.1259 0.3158 0.89 7m58-a1-m1-cB_7m58-a1-m1-cC
75 2aal-a2-m1-cE 129 47 0.1905 0.0930 0.2553 1.7 2aal-a2-m1-cD_2aal-a2-m1-cE
76 2aal-a2-m1-cD 129 47 0.1905 0.0930 0.2553 1.7 2aal-a2-m1-cD_2aal-a2-m1-cE
77 5i1u-a1-m1-cB 294 22 0.1905 0.0408 0.5455 2.6 5i1u-a1-m1-cB_5i1u-a1-m1-cA
78 5i1u-a1-m1-cA 300 22 0.1905 0.0400 0.5455 2.7 5i1u-a1-m1-cB_5i1u-a1-m1-cA
79 1s0y-a2-m1-cK 61 44 0.1905 0.1967 0.2727 3.0 1s0y-a2-m1-cK_1s0y-a2-m1-cG
80 1s0y-a2-m1-cG 62 44 0.1905 0.1935 0.2727 3.0 1s0y-a2-m1-cK_1s0y-a2-m1-cG
81 4b79-a1-m2-cB 233 20 0.1587 0.0429 0.5000 6.0 4b79-a1-m1-cB_4b79-a1-m2-cB, 4b79-a1-m2-cB_4b79-a1-m2-cA
82 4b79-a1-m1-cB 233 20 0.1587 0.0429 0.5000 6.0 4b79-a1-m1-cB_4b79-a1-m2-cB
83 3jtw-a2-m3-cB 169 27 0.1587 0.0592 0.3704 7.1 3jtw-a2-m1-cB_3jtw-a2-m3-cB
84 3jtw-a2-m1-cB 169 27 0.1587 0.0592 0.3704 7.1 3jtw-a2-m1-cB_3jtw-a2-m3-cB

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Reference:
Jacob Schwartz et al.

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