Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
PLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKA
HHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKIN

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1ecm-a2-m1-cB 95 95 1.0000 1.0000 1.0000 1.40e-61 1ecm-a2-m1-cA_1ecm-a2-m1-cB
2 1ecm-a1-m2-cB 95 95 1.0000 1.0000 1.0000 1.40e-61 1ecm-a1-m1-cB_1ecm-a1-m2-cB
3 1ecm-a1-m1-cB 95 95 1.0000 1.0000 1.0000 1.40e-61 1ecm-a1-m1-cB_1ecm-a1-m2-cB
4 1ecm-a2-m1-cA 91 90 0.9474 0.9890 1.0000 1.72e-57 1ecm-a2-m1-cA_1ecm-a2-m1-cB
5 3rmi-a1-m2-cA 105 79 0.2526 0.2286 0.3038 8.81e-04 3rmi-a1-m1-cA_3rmi-a1-m2-cA
6 3rmi-a1-m1-cA 105 79 0.2526 0.2286 0.3038 8.81e-04 3rmi-a1-m1-cA_3rmi-a1-m2-cA
7 2fp2-a1-m1-cB 163 58 0.2000 0.1166 0.3276 0.002 2fp2-a1-m1-cA_2fp2-a1-m1-cB
8 2fp2-a1-m1-cA 162 58 0.2000 0.1173 0.3276 0.002 2fp2-a1-m1-cA_2fp2-a1-m1-cB
9 1ybz-a2-m2-cA 76 49 0.1895 0.2368 0.3673 0.010 1ybz-a2-m1-cA_1ybz-a2-m2-cA
10 1ybz-a2-m1-cA 76 49 0.1895 0.2368 0.3673 0.010 1ybz-a2-m1-cA_1ybz-a2-m2-cA
11 2w1a-a1-m2-cD 79 54 0.2211 0.2658 0.3889 0.015 2w1a-a1-m1-cD_2w1a-a1-m2-cD
12 2w1a-a1-m1-cD 79 54 0.2211 0.2658 0.3889 0.015 2w1a-a1-m1-cD_2w1a-a1-m2-cD
13 2d8d-a1-m1-cA 80 77 0.2421 0.2875 0.2987 0.089 2d8d-a1-m1-cA_2d8d-a1-m1-cB
14 2d8d-a1-m1-cB 83 77 0.2421 0.2771 0.2987 0.11 2d8d-a1-m1-cA_2d8d-a1-m1-cB
15 6al9-a1-m1-cB 91 85 0.2632 0.2747 0.2941 0.12 6al9-a1-m1-cA_6al9-a1-m1-cB
16 6al9-a1-m1-cA 90 85 0.2632 0.2778 0.2941 0.13 6al9-a1-m1-cA_6al9-a1-m1-cB
17 5j6f-a1-m2-cB 340 74 0.2316 0.0647 0.2973 1.4 5j6f-a1-m1-cB_5j6f-a1-m2-cB, 5j6f-a1-m2-cB_5j6f-a1-m1-cA, 5j6f-a1-m2-cB_5j6f-a1-m2-cA
18 5j6f-a1-m1-cB 340 74 0.2316 0.0647 0.2973 1.4 5j6f-a1-m1-cB_5j6f-a1-m2-cB
19 5j6f-a1-m2-cA 352 74 0.2316 0.0625 0.2973 1.4 5j6f-a1-m2-cB_5j6f-a1-m2-cA
20 5j6f-a1-m1-cA 352 74 0.2316 0.0625 0.2973 1.4 5j6f-a1-m2-cB_5j6f-a1-m1-cA
21 1l3l-a2-m1-cA 228 31 0.1263 0.0526 0.3871 6.6 1l3l-a2-m1-cC_1l3l-a2-m1-cA
22 1l3l-a2-m1-cC 219 31 0.1263 0.0548 0.3871 6.7 1l3l-a2-m1-cC_1l3l-a2-m1-cA
23 1n4o-a1-m1-cB 272 28 0.1579 0.0551 0.5357 7.1 1n4o-a1-m1-cA_1n4o-a1-m1-cB
24 1n4o-a1-m1-cA 267 28 0.1579 0.0562 0.5357 7.4 1n4o-a1-m1-cA_1n4o-a1-m1-cB
25 2iec-a1-m1-cC 111 18 0.1053 0.0901 0.5556 9.3 2iec-a1-m1-cC_2iec-a1-m1-cD

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600