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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
PLMVKVLDAVRGSPAINVAVHVFRKADTWEPFASGKTSESGELHGLTTEEEFVEGIYKVE
IDTPFHEHAEVVFTANRRYTIAALLSPYSYSTTAVVT

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3cbr-a1-m2-cB 97 97 1.0000 1.0000 1.0000 1.08e-67 3cbr-a1-m1-cB_3cbr-a1-m2-cB
2 3cbr-a1-m1-cB 97 97 1.0000 1.0000 1.0000 1.08e-67 3cbr-a1-m1-cB_3cbr-a1-m2-cA, 3cbr-a1-m1-cB_3cbr-a1-m2-cB
3 3cbr-a1-m2-cA 114 113 1.0000 0.8509 0.8584 5.47e-60 3cbr-a1-m1-cB_3cbr-a1-m2-cA
4 1tfp-a2-m2-cB 114 113 0.7938 0.6754 0.6814 7.53e-46 1tfp-a2-m1-cA_1tfp-a2-m2-cB, 1tfp-a2-m1-cB_1tfp-a2-m2-cB, 1tfp-a2-m2-cA_1tfp-a2-m2-cB
5 1tfp-a2-m2-cA 114 113 0.7938 0.6754 0.6814 7.53e-46 1tfp-a2-m2-cA_1tfp-a2-m2-cB
6 1tfp-a2-m1-cB 114 113 0.7938 0.6754 0.6814 7.53e-46 1tfp-a2-m1-cB_1tfp-a2-m2-cB
7 1tfp-a2-m1-cA 114 113 0.7938 0.6754 0.6814 7.53e-46 1tfp-a2-m1-cA_1tfp-a2-m2-cB
8 7kjj-a1-m2-cB 114 113 0.6907 0.5877 0.5929 1.59e-38 7kjj-a1-m1-cB_7kjj-a1-m2-cB, 7kjj-a1-m2-cB_7kjj-a1-m1-cA, 7kjj-a1-m2-cB_7kjj-a1-m2-cA
9 7kjj-a1-m1-cB 114 113 0.6907 0.5877 0.5929 1.59e-38 7kjj-a1-m1-cB_7kjj-a1-m2-cB
10 7kjj-a1-m2-cA 115 113 0.6907 0.5826 0.5929 1.82e-38 7kjj-a1-m2-cB_7kjj-a1-m2-cA
11 7kjj-a1-m1-cA 115 113 0.6907 0.5826 0.5929 1.82e-38 7kjj-a1-m2-cB_7kjj-a1-m1-cA
12 6gno-a1-m2-cB 114 113 0.6186 0.5263 0.5310 2.00e-30 6gno-a1-m1-cA_6gno-a1-m2-cB, 6gno-a1-m2-cA_6gno-a1-m2-cB
13 6gno-a1-m2-cA 114 113 0.6186 0.5263 0.5310 2.00e-30 6gno-a1-m1-cA_6gno-a1-m2-cA, 6gno-a1-m2-cA_6gno-a1-m2-cB
14 6gno-a1-m1-cA 114 113 0.6186 0.5263 0.5310 2.00e-30 6gno-a1-m1-cA_6gno-a1-m2-cA, 6gno-a1-m1-cA_6gno-a1-m2-cB
15 7kcn-a1-m2-cA 114 108 0.4124 0.3509 0.3704 1.26e-16 7kcn-a1-m2-cA_7kcn-a1-m2-cB
16 7kcn-a1-m1-cA 114 108 0.4124 0.3509 0.3704 1.26e-16 7kcn-a1-m1-cA_7kcn-a1-m2-cB
17 7kcn-a1-m2-cB 117 108 0.4124 0.3419 0.3704 1.48e-16 7kcn-a1-m1-cA_7kcn-a1-m2-cB, 7kcn-a1-m1-cB_7kcn-a1-m2-cB, 7kcn-a1-m2-cA_7kcn-a1-m2-cB
18 7kcn-a1-m1-cB 117 108 0.4124 0.3419 0.3704 1.48e-16 7kcn-a1-m1-cB_7kcn-a1-m2-cB
19 2h6u-a1-m1-cD 114 108 0.3505 0.2982 0.3148 3.17e-12 2h6u-a1-m1-cA_2h6u-a1-m1-cD, 2h6u-a1-m1-cC_2h6u-a1-m1-cD
20 2h6u-a1-m1-cC 114 108 0.3505 0.2982 0.3148 3.17e-12 2h6u-a1-m1-cA_2h6u-a1-m1-cC, 2h6u-a1-m1-cC_2h6u-a1-m1-cD
21 2h6u-a1-m1-cA 114 108 0.3505 0.2982 0.3148 3.17e-12 2h6u-a1-m1-cA_2h6u-a1-m1-cC, 2h6u-a1-m1-cA_2h6u-a1-m1-cD
22 2gpz-a1-m2-cC 110 105 0.3608 0.3182 0.3333 2.54e-07 2gpz-a1-m1-cA_2gpz-a1-m2-cC, 2gpz-a1-m1-cC_2gpz-a1-m2-cC, 2gpz-a1-m2-cA_2gpz-a1-m2-cC
23 2gpz-a1-m2-cA 110 105 0.3608 0.3182 0.3333 2.54e-07 2gpz-a1-m2-cA_2gpz-a1-m2-cC
24 2gpz-a1-m1-cC 110 105 0.3608 0.3182 0.3333 2.54e-07 2gpz-a1-m1-cC_2gpz-a1-m2-cC
25 2gpz-a1-m1-cA 110 105 0.3608 0.3182 0.3333 2.54e-07 2gpz-a1-m1-cA_2gpz-a1-m2-cC
26 2g2n-a2-m2-cD 112 110 0.3402 0.2946 0.3000 2.64e-06 2g2n-a2-m1-cB_2g2n-a2-m2-cD
27 2g2n-a1-m1-cD 112 110 0.3402 0.2946 0.3000 2.64e-06 2g2n-a1-m1-cA_2g2n-a1-m1-cD
28 2g2n-a1-m1-cC 112 110 0.3402 0.2946 0.3000 2.64e-06 2g2n-a1-m1-cA_2g2n-a1-m1-cC
29 2g2p-a1-m1-cB 111 110 0.3402 0.2973 0.3000 2.85e-06 2g2p-a1-m1-cA_2g2p-a1-m1-cB
30 2g2p-a1-m1-cA 111 110 0.3402 0.2973 0.3000 2.85e-06 2g2p-a1-m1-cA_2g2p-a1-m1-cB
31 2g2n-a2-m1-cB 111 110 0.3402 0.2973 0.3000 2.85e-06 2g2n-a2-m1-cB_2g2n-a2-m2-cD
32 2g2n-a1-m1-cA 111 110 0.3402 0.2973 0.3000 2.85e-06 2g2n-a1-m1-cA_2g2n-a1-m1-cC, 2g2n-a1-m1-cA_2g2n-a1-m1-cD
33 4q14-a1-m1-cB 118 111 0.2990 0.2458 0.2613 0.52 4q14-a1-m1-cA_4q14-a1-m1-cB
34 4q14-a1-m1-cA 118 111 0.2990 0.2458 0.2613 0.52 4q14-a1-m1-cA_4q14-a1-m1-cB
35 5enz-a1-m1-cA 365 83 0.2474 0.0658 0.2892 1.6 5enz-a1-m1-cA_5enz-a1-m1-cB
36 5enz-a1-m1-cB 373 83 0.2474 0.0643 0.2892 1.7 5enz-a1-m1-cA_5enz-a1-m1-cB
37 5z5m-a1-m1-cD 272 113 0.2990 0.1066 0.2566 2.6 5z5m-a1-m1-cB_5z5m-a1-m1-cD, 5z5m-a1-m1-cC_5z5m-a1-m1-cD, 5z5m-a1-m1-cD_5z5m-a1-m1-cA
38 5z5m-a1-m1-cC 272 113 0.2990 0.1066 0.2566 2.6 5z5m-a1-m1-cC_5z5m-a1-m1-cD
39 5z5m-a1-m1-cA 273 113 0.2990 0.1062 0.2566 2.6 5z5m-a1-m1-cD_5z5m-a1-m1-cA
40 5z5m-a1-m1-cB 272 113 0.2990 0.1066 0.2566 2.7 5z5m-a1-m1-cB_5z5m-a1-m1-cD
41 7o54-a1-m3-cA 165 47 0.1649 0.0970 0.3404 3.7 7o54-a1-m2-cA_7o54-a1-m3-cA
42 7o54-a1-m2-cA 165 47 0.1649 0.0970 0.3404 3.7 7o54-a1-m2-cA_7o54-a1-m3-cA
43 3mq0-a1-m1-cB 248 92 0.2577 0.1008 0.2717 8.4 3mq0-a1-m1-cA_3mq0-a1-m1-cB
44 1qsj-a2-m1-cD 276 41 0.1443 0.0507 0.3415 9.4 1qsj-a2-m1-cC_1qsj-a2-m1-cD
45 1qsj-a2-m1-cC 276 41 0.1443 0.0507 0.3415 9.4 1qsj-a2-m1-cC_1qsj-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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