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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
PLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVDFYFGKLRN
IELICQENEGENDPVLQRIVDILYATD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6yf5-a2-m1-cC 87 87 1.0000 1.0000 1.0000 3.49e-58 6yf5-a2-m1-cD_6yf5-a2-m1-cC
2 6yf5-a2-m1-cD 82 82 0.9425 1.0000 1.0000 9.65e-54 6yf5-a2-m1-cD_6yf5-a2-m1-cC
3 5jvu-a1-m1-cA 76 59 0.4713 0.5395 0.6949 6.66e-23 5jvu-a1-m1-cB_5jvu-a1-m1-cA
4 3mtu-a2-m1-cD 64 56 0.4828 0.6562 0.7500 1.26e-22 3mtu-a2-m1-cD_3mtu-a2-m1-cB
5 3mtu-a2-m1-cB 65 56 0.4828 0.6462 0.7500 1.27e-22 3mtu-a2-m1-cB_3mtu-a2-m1-cA, 3mtu-a2-m1-cD_3mtu-a2-m1-cB
6 6pfp-a2-m1-cD 156 75 0.4943 0.2756 0.5733 1.41e-22 6pfp-a2-m1-cC_6pfp-a2-m1-cD
7 6pfp-a2-m1-cC 156 75 0.4943 0.2756 0.5733 1.41e-22 6pfp-a2-m1-cC_6pfp-a2-m1-cD
8 3mtu-a2-m1-cA 72 56 0.4828 0.5833 0.7500 2.35e-22 3mtu-a2-m1-cB_3mtu-a2-m1-cA
9 5jvu-a1-m1-cB 69 50 0.4483 0.5652 0.7800 2.37e-22 5jvu-a1-m1-cB_5jvu-a1-m1-cA
10 5jvp-a2-m3-cB 88 36 0.4138 0.4091 1.0000 3.83e-21 5jvp-a2-m1-cB_5jvp-a2-m3-cB
11 5jvp-a2-m1-cB 88 36 0.4138 0.4091 1.0000 3.83e-21 5jvp-a2-m1-cB_5jvp-a2-m3-cB
12 4xa1-a1-m1-cB 155 36 0.4138 0.2323 1.0000 5.02e-21 4xa1-a1-m1-cA_4xa1-a1-m1-cB
13 5jvm-a1-m1-cB 79 61 0.4828 0.5316 0.6885 5.44e-21 5jvm-a1-m1-cB_5jvm-a1-m1-cA
14 5jvm-a1-m1-cA 82 61 0.4828 0.5122 0.6885 6.80e-21 5jvm-a1-m1-cB_5jvm-a1-m1-cA
15 6pf2-a1-m1-cB 150 61 0.4713 0.2733 0.6721 7.02e-21 6pf2-a1-m1-cB_6pf2-a1-m1-cA
16 6pf2-a1-m1-cA 157 61 0.4713 0.2611 0.6721 1.04e-20 6pf2-a1-m1-cB_6pf2-a1-m1-cA
17 5jv3-a2-m1-cD 68 35 0.4023 0.5147 1.0000 1.44e-20 5jv3-a2-m1-cC_5jv3-a2-m1-cD
18 4xa1-a1-m1-cA 153 35 0.4023 0.2288 1.0000 2.98e-20 4xa1-a1-m1-cA_4xa1-a1-m1-cB
19 5jv3-a2-m1-cC 64 33 0.3793 0.5156 1.0000 6.40e-19 5jv3-a2-m1-cC_5jv3-a2-m1-cD
20 4xa6-a2-m1-cC 100 42 0.4253 0.3700 0.8810 4.84e-18 4xa6-a2-m1-cD_4xa6-a2-m1-cC
21 4xa6-a2-m1-cD 93 41 0.4138 0.3871 0.8780 2.91e-17 4xa6-a2-m1-cD_4xa6-a2-m1-cC
22 4xa6-a1-m1-cA 149 41 0.4138 0.2416 0.8780 8.70e-17 4xa6-a1-m1-cB_4xa6-a1-m1-cA
23 4xa3-a1-m1-cA 142 79 0.4483 0.2746 0.4937 3.09e-14 4xa3-a1-m1-cA_4xa3-a1-m1-cB
24 4xa6-a1-m1-cB 146 40 0.3908 0.2329 0.8500 9.01e-14 4xa6-a1-m1-cB_4xa6-a1-m1-cA
25 5jx1-a1-m2-cA 64 36 0.3448 0.4688 0.8333 3.69e-13 5jx1-a1-m1-cA_5jx1-a1-m2-cA
26 5jx1-a1-m1-cA 64 36 0.3448 0.4688 0.8333 3.69e-13 5jx1-a1-m1-cA_5jx1-a1-m2-cA
27 4xa3-a1-m1-cB 142 78 0.4368 0.2676 0.4872 3.70e-13 4xa3-a1-m1-cA_4xa3-a1-m1-cB
28 3s4r-a1-m1-cB 91 30 0.2184 0.2088 0.6333 5.14e-04 3s4r-a1-m1-cA_3s4r-a1-m1-cB
29 3g1e-a1-m1-cB 37 29 0.2069 0.4865 0.6207 0.001 3g1e-a1-m1-cA_3g1e-a1-m1-cB
30 3g1e-a1-m1-cA 37 29 0.2069 0.4865 0.6207 0.001 3g1e-a1-m1-cA_3g1e-a1-m1-cB
31 5m9e-a2-m1-cD 70 40 0.1954 0.2429 0.4250 0.004 5m9e-a2-m1-cC_5m9e-a2-m1-cD
32 3s4r-a1-m1-cA 88 26 0.1954 0.1932 0.6538 0.006 3s4r-a1-m1-cA_3s4r-a1-m1-cB
33 5m9e-a2-m1-cC 68 39 0.1954 0.2500 0.4359 0.007 5m9e-a2-m1-cC_5m9e-a2-m1-cD
34 4e61-a1-m1-cA 91 85 0.3103 0.2967 0.3176 0.009 4e61-a1-m1-cB_4e61-a1-m1-cA
35 4e61-a1-m1-cB 84 83 0.2759 0.2857 0.2892 0.026 4e61-a1-m1-cB_4e61-a1-m1-cA
36 3dn7-a1-m1-cB 145 63 0.2069 0.1241 0.2857 0.80 3dn7-a1-m1-cA_3dn7-a1-m1-cB
37 3dn7-a1-m1-cA 143 63 0.2069 0.1259 0.2857 0.81 3dn7-a1-m1-cA_3dn7-a1-m1-cB
38 3ep1-a1-m1-cA 167 48 0.1839 0.0958 0.3333 6.3 3ep1-a1-m1-cB_3ep1-a1-m1-cA
39 3ep1-a1-m1-cB 164 48 0.1839 0.0976 0.3333 6.7 3ep1-a1-m1-cB_3ep1-a1-m1-cA
40 3zuh-a1-m1-cF 286 31 0.1379 0.0420 0.3871 7.3 3zuh-a1-m1-cE_3zuh-a1-m1-cF
41 3zuh-a1-m1-cE 286 31 0.1379 0.0420 0.3871 7.3 3zuh-a1-m1-cE_3zuh-a1-m1-cF

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Reference:
Jacob Schwartz et al.

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