Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=62)
PMISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINFVEHGEHLPDY
VP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1s0y-a2-m1-cG 62 62 1.0000 1.0000 1.0000 5.95e-42 1s0y-a2-m1-cK_1s0y-a2-m1-cG
2 1s0y-a2-m1-cK 61 61 0.9839 1.0000 1.0000 4.78e-41 1s0y-a2-m1-cK_1s0y-a2-m1-cG
3 7m59-a1-m3-cB 64 61 0.4355 0.4219 0.4426 8.96e-15 7m59-a1-m2-cB_7m59-a1-m3-cB, 7m59-a1-m3-cA_7m59-a1-m3-cB
4 7m59-a1-m3-cA 64 61 0.4355 0.4219 0.4426 8.96e-15 7m59-a1-m3-cA_7m59-a1-m3-cB
5 7m59-a1-m2-cB 64 61 0.4355 0.4219 0.4426 8.96e-15 7m59-a1-m2-cB_7m59-a1-m3-cB
6 2opa-a1-m3-cB 61 59 0.3387 0.3443 0.3559 1.50e-06 2opa-a1-m2-cB_2opa-a1-m3-cB, 2opa-a1-m3-cA_2opa-a1-m3-cB
7 2opa-a1-m3-cA 61 59 0.3387 0.3443 0.3559 1.50e-06 2opa-a1-m3-cA_2opa-a1-m3-cB
8 2opa-a1-m2-cB 61 59 0.3387 0.3443 0.3559 1.50e-06 2opa-a1-m2-cB_2opa-a1-m3-cB
9 7m58-a1-m1-cC 143 58 0.2903 0.1259 0.3103 1.57e-04 7m58-a1-m1-cB_7m58-a1-m1-cC
10 7m58-a1-m1-cB 143 58 0.2903 0.1259 0.3103 1.57e-04 7m58-a1-m1-cB_7m58-a1-m1-cC
11 4faz-a1-m2-cC 62 55 0.3226 0.3226 0.3636 6.47e-04 4faz-a1-m1-cB_4faz-a1-m2-cC, 4faz-a1-m2-cB_4faz-a1-m2-cC
12 4faz-a1-m2-cB 62 55 0.3226 0.3226 0.3636 6.47e-04 4faz-a1-m2-cB_4faz-a1-m2-cC
13 4faz-a1-m1-cB 62 55 0.3226 0.3226 0.3636 6.47e-04 4faz-a1-m1-cB_4faz-a1-m2-cC
14 2x4k-a1-m3-cB 62 44 0.2258 0.2258 0.3182 0.005 2x4k-a1-m2-cB_2x4k-a1-m3-cB, 2x4k-a1-m3-cA_2x4k-a1-m3-cB
15 2x4k-a1-m3-cA 62 44 0.2258 0.2258 0.3182 0.005 2x4k-a1-m3-cA_2x4k-a1-m3-cB
16 2x4k-a1-m2-cB 62 44 0.2258 0.2258 0.3182 0.005 2x4k-a1-m2-cB_2x4k-a1-m3-cB
17 6vvm-a1-m1-cC 123 62 0.2903 0.1463 0.2903 0.010 6vvm-a1-m1-cA_6vvm-a1-m1-cC, 6vvm-a1-m1-cB_6vvm-a1-m1-cC
18 6vvm-a1-m1-cB 123 62 0.2903 0.1463 0.2903 0.010 6vvm-a1-m1-cA_6vvm-a1-m1-cB, 6vvm-a1-m1-cB_6vvm-a1-m1-cC
19 6vvm-a1-m1-cA 123 62 0.2903 0.1463 0.2903 0.010 6vvm-a1-m1-cA_6vvm-a1-m1-cB, 6vvm-a1-m1-cA_6vvm-a1-m1-cC
20 6blm-a1-m1-cC 127 50 0.2742 0.1339 0.3400 0.017 6blm-a1-m1-cA_6blm-a1-m1-cC, 6blm-a1-m1-cB_6blm-a1-m1-cC
21 6blm-a1-m1-cB 127 50 0.2742 0.1339 0.3400 0.017 6blm-a1-m1-cA_6blm-a1-m1-cB, 6blm-a1-m1-cB_6blm-a1-m1-cC
22 6blm-a1-m1-cA 127 50 0.2742 0.1339 0.3400 0.017 6blm-a1-m1-cA_6blm-a1-m1-cB, 6blm-a1-m1-cA_6blm-a1-m1-cC
23 6vvn-a1-m1-cC 123 50 0.2581 0.1301 0.3200 0.038 6vvn-a1-m1-cA_6vvn-a1-m1-cC, 6vvn-a1-m1-cB_6vvn-a1-m1-cC
24 6vvn-a1-m1-cC 123 62 0.2581 0.1301 0.2581 0.15 6vvn-a1-m1-cA_6vvn-a1-m1-cC, 6vvn-a1-m1-cB_6vvn-a1-m1-cC
25 6vvn-a1-m1-cB 123 50 0.2581 0.1301 0.3200 0.038 6vvn-a1-m1-cA_6vvn-a1-m1-cB, 6vvn-a1-m1-cB_6vvn-a1-m1-cC
26 6vvn-a1-m1-cB 123 62 0.2581 0.1301 0.2581 0.15 6vvn-a1-m1-cA_6vvn-a1-m1-cB, 6vvn-a1-m1-cB_6vvn-a1-m1-cC
27 6vvn-a1-m1-cA 123 50 0.2581 0.1301 0.3200 0.038 6vvn-a1-m1-cA_6vvn-a1-m1-cB, 6vvn-a1-m1-cA_6vvn-a1-m1-cC
28 6vvn-a1-m1-cA 123 62 0.2581 0.1301 0.2581 0.15 6vvn-a1-m1-cA_6vvn-a1-m1-cB, 6vvn-a1-m1-cA_6vvn-a1-m1-cC
29 5unq-a1-m1-cF 123 37 0.2419 0.1220 0.4054 0.048 5unq-a1-m1-cA_5unq-a1-m1-cF
30 5unq-a1-m1-cA 123 37 0.2419 0.1220 0.4054 0.048 5unq-a1-m1-cA_5unq-a1-m1-cF
31 7xuy-a1-m6-cA 64 50 0.2581 0.2500 0.3200 0.15 7xuy-a1-m3-cA_7xuy-a1-m6-cA, 7xuy-a1-m5-cA_7xuy-a1-m6-cA
32 7xuy-a1-m5-cA 64 50 0.2581 0.2500 0.3200 0.15 7xuy-a1-m5-cA_7xuy-a1-m6-cA
33 7xuy-a1-m3-cA 64 50 0.2581 0.2500 0.3200 0.15 7xuy-a1-m3-cA_7xuy-a1-m6-cA
34 4yfg-a1-m1-cB 481 33 0.1935 0.0249 0.3636 0.55 4yfg-a1-m1-cA_4yfg-a1-m1-cB
35 4yfg-a1-m1-cA 481 33 0.1935 0.0249 0.3636 0.55 4yfg-a1-m1-cA_4yfg-a1-m1-cB
36 6vvr-a1-m1-cC 123 43 0.2097 0.1057 0.3023 0.57 6vvr-a1-m1-cB_6vvr-a1-m1-cC
37 6vvr-a1-m1-cC 123 55 0.1935 0.0976 0.2182 1.1 6vvr-a1-m1-cB_6vvr-a1-m1-cC
38 6vvr-a1-m1-cB 123 43 0.2097 0.1057 0.3023 0.57 6vvr-a1-m1-cB_6vvr-a1-m1-cC
39 6vvr-a1-m1-cB 123 55 0.1935 0.0976 0.2182 1.1 6vvr-a1-m1-cB_6vvr-a1-m1-cC
40 2yd6-a1-m2-cA 195 33 0.1935 0.0615 0.3636 0.65 2yd6-a1-m1-cA_2yd6-a1-m2-cA
41 2yd6-a1-m1-cA 195 33 0.1935 0.0615 0.3636 0.65 2yd6-a1-m1-cA_2yd6-a1-m2-cA
42 2aal-a2-m1-cE 129 44 0.1935 0.0930 0.2727 0.80 2aal-a2-m1-cD_2aal-a2-m1-cE
43 2aal-a2-m1-cD 129 44 0.1935 0.0930 0.2727 0.80 2aal-a2-m1-cD_2aal-a2-m1-cE
44 3ry0-a1-m3-cB 63 44 0.1935 0.1905 0.2727 3.0 3ry0-a1-m2-cB_3ry0-a1-m3-cB, 3ry0-a1-m3-cB_3ry0-a1-m3-cA
45 3ry0-a1-m2-cB 63 44 0.1935 0.1905 0.2727 3.0 3ry0-a1-m2-cB_3ry0-a1-m3-cB
46 3ry0-a1-m3-cA 65 44 0.1935 0.1846 0.2727 3.0 3ry0-a1-m3-cB_3ry0-a1-m3-cA
47 4lhp-a4-m1-cL 131 59 0.2419 0.1145 0.2542 3.5 4lhp-a4-m1-cJ_4lhp-a4-m1-cL
48 4lhp-a4-m1-cJ 131 59 0.2419 0.1145 0.2542 3.5 4lhp-a4-m1-cJ_4lhp-a4-m1-cL
49 7dov-a1-m1-cC 148 34 0.1774 0.0743 0.3235 3.6 7dov-a1-m1-cA_7dov-a1-m1-cC
50 7dov-a1-m1-cA 148 34 0.1774 0.0743 0.3235 3.6 7dov-a1-m1-cA_7dov-a1-m1-cC
51 1otf-a1-m1-cF 59 44 0.2097 0.2203 0.2955 6.0 1otf-a1-m1-cC_1otf-a1-m1-cF
52 1otf-a1-m1-cE 59 44 0.2097 0.2203 0.2955 6.0 1otf-a1-m1-cC_1otf-a1-m1-cE
53 1otf-a1-m1-cC 59 44 0.2097 0.2203 0.2955 6.0 1otf-a1-m1-cC_1otf-a1-m1-cE, 1otf-a1-m1-cC_1otf-a1-m1-cF
54 2ekg-a1-m1-cB 298 24 0.1613 0.0336 0.4167 6.1 2ekg-a1-m1-cA_2ekg-a1-m1-cB
55 3upl-a1-m1-cB 437 46 0.2581 0.0366 0.3478 6.2 3upl-a1-m1-cA_3upl-a1-m1-cB
56 3upl-a1-m1-cA 437 46 0.2581 0.0366 0.3478 6.2 3upl-a1-m1-cA_3upl-a1-m1-cB
57 2ekg-a1-m1-cA 288 24 0.1613 0.0347 0.4167 6.7 2ekg-a1-m1-cA_2ekg-a1-m1-cB
58 3abf-a1-m1-cE 61 43 0.2097 0.2131 0.3023 7.5 3abf-a1-m1-cE_3abf-a1-m1-cC
59 3abf-a1-m1-cC 63 43 0.2097 0.2063 0.3023 7.5 3abf-a1-m1-cD_3abf-a1-m1-cC, 3abf-a1-m1-cE_3abf-a1-m1-cC
60 1f2i-a2-m1-cJ 66 19 0.1452 0.1364 0.4737 7.9 1f2i-a2-m1-cI_1f2i-a2-m1-cJ
61 1f2i-a2-m1-cI 66 19 0.1452 0.1364 0.4737 7.9 1f2i-a2-m1-cI_1f2i-a2-m1-cJ
62 2o3z-a1-m1-cB 267 28 0.1774 0.0412 0.3929 8.0 2o3z-a1-m1-cA_2o3z-a1-m1-cB
63 2o3z-a1-m1-cA 267 28 0.1774 0.0412 0.3929 8.0 2o3z-a1-m1-cA_2o3z-a1-m1-cB
64 3abf-a1-m1-cD 62 43 0.2097 0.2097 0.3023 8.1 3abf-a1-m1-cD_3abf-a1-m1-cC
65 2go3-a3-m2-cB 266 28 0.1774 0.0414 0.3929 8.4 2go3-a3-m1-cA_2go3-a3-m2-cB
66 2go3-a3-m1-cA 266 28 0.1774 0.0414 0.3929 8.4 2go3-a3-m1-cA_2go3-a3-m2-cB
67 4wd0-a1-m6-cA 230 55 0.3226 0.0870 0.3636 8.5 4wd0-a1-m2-cA_4wd0-a1-m6-cA
68 4wd0-a1-m2-cA 230 55 0.3226 0.0870 0.3636 8.5 4wd0-a1-m2-cA_4wd0-a1-m6-cA
69 4fdx-a1-m3-cA 61 23 0.1613 0.1639 0.4348 8.9 4fdx-a1-m3-cA_4fdx-a1-m3-cB
70 3fwt-a1-m3-cA 116 39 0.2097 0.1121 0.3333 9.3 3fwt-a1-m2-cA_3fwt-a1-m3-cA
71 3fwt-a1-m2-cA 116 39 0.2097 0.1121 0.3333 9.3 3fwt-a1-m2-cA_3fwt-a1-m3-cA

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600