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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PMKKIEAIVKPFKLDDVREALTEIGITGMTVSEVKGFGRVDFLPKIKIELVLADDAVERA
IDVIVEVARSGKIGDGKIFVLPVEEAIRIRTGERSDAAV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2gw8-a1-m3-cA 99 99 1.0000 1.0000 1.0000 1.80e-63 2gw8-a1-m2-cA_2gw8-a1-m3-cA
2 2gw8-a1-m2-cA 99 99 1.0000 1.0000 1.0000 1.80e-63 2gw8-a1-m2-cA_2gw8-a1-m3-cA
3 2pii-a1-m3-cA 112 112 0.7071 0.6250 0.6250 7.65e-42 2pii-a1-m2-cA_2pii-a1-m3-cA
4 2pii-a1-m2-cA 112 112 0.7071 0.6250 0.6250 7.65e-42 2pii-a1-m2-cA_2pii-a1-m3-cA
5 2eg2-a2-m9-cA 95 98 0.6364 0.6632 0.6429 4.79e-40 2eg2-a2-m5-cA_2eg2-a2-m9-cA, 2eg2-a2-m6-cA_2eg2-a2-m9-cA
6 2eg2-a2-m6-cA 95 98 0.6364 0.6632 0.6429 4.79e-40 2eg2-a2-m6-cA_2eg2-a2-m9-cA
7 2eg2-a2-m5-cA 95 98 0.6364 0.6632 0.6429 4.79e-40 2eg2-a2-m5-cA_2eg2-a2-m9-cA
8 5l9n-a1-m3-cA 92 95 0.6566 0.7065 0.6842 9.35e-40 5l9n-a1-m2-cA_5l9n-a1-m3-cA
9 5l9n-a1-m2-cA 92 95 0.6566 0.7065 0.6842 9.35e-40 5l9n-a1-m2-cA_5l9n-a1-m3-cA
10 4cnz-a1-m1-cB 100 100 0.5859 0.5800 0.5800 9.80e-37 4cnz-a1-m1-cA_4cnz-a1-m1-cB
11 4cnz-a1-m1-cA 100 100 0.5859 0.5800 0.5800 9.80e-37 4cnz-a1-m1-cA_4cnz-a1-m1-cB
12 1hwu-a3-m1-cA 99 99 0.6566 0.6566 0.6566 7.89e-36 1hwu-a3-m1-cA_1hwu-a3-m2-cD, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
13 4co2-a2-m3-cA 112 112 0.5960 0.5268 0.5268 7.96e-36 4co2-a2-m2-cA_4co2-a2-m3-cA
14 4co2-a2-m2-cA 112 112 0.5960 0.5268 0.5268 7.96e-36 4co2-a2-m2-cA_4co2-a2-m3-cA
15 2xul-a1-m1-cA 106 105 0.6263 0.5849 0.5905 1.59e-35 2xul-a1-m1-cA_2xul-a1-m1-cC
16 2xul-a1-m1-cC 107 106 0.6263 0.5794 0.5849 2.56e-35 2xul-a1-m1-cA_2xul-a1-m1-cC
17 3n5b-a1-m3-cA 112 112 0.6061 0.5357 0.5357 3.00e-35 3n5b-a1-m2-cA_3n5b-a1-m3-cA
18 3n5b-a1-m2-cA 112 112 0.6061 0.5357 0.5357 3.00e-35 3n5b-a1-m2-cA_3n5b-a1-m3-cA
19 3lf0-a1-m1-cC 101 100 0.5657 0.5545 0.5600 7.73e-35 3lf0-a1-m1-cC_3lf0-a1-m1-cB
20 2ns1-a1-m3-cB 113 113 0.5960 0.5221 0.5221 1.12e-34 2ns1-a1-m2-cB_2ns1-a1-m3-cB
21 2ns1-a1-m2-cB 113 113 0.5960 0.5221 0.5221 1.12e-34 2ns1-a1-m2-cB_2ns1-a1-m3-cB
22 2nuu-a4-m2-cK 112 112 0.5960 0.5268 0.5268 1.18e-34 2nuu-a4-m1-cH_2nuu-a4-m2-cK
23 2nuu-a4-m1-cH 112 112 0.5960 0.5268 0.5268 1.18e-34 2nuu-a4-m1-cH_2nuu-a4-m2-cK
24 2gnk-a2-m3-cA 95 98 0.5758 0.6000 0.5816 1.35e-34 2gnk-a2-m2-cA_2gnk-a2-m3-cA
25 2gnk-a2-m2-cA 95 98 0.5758 0.6000 0.5816 1.35e-34 2gnk-a2-m2-cA_2gnk-a2-m3-cA
26 1hwu-a3-m2-cD 99 99 0.6465 0.6465 0.6465 1.68e-34 1hwu-a3-m1-cA_1hwu-a3-m2-cD
27 3bzq-a1-m3-cA 99 98 0.5556 0.5556 0.5612 2.06e-34 3bzq-a1-m2-cA_3bzq-a1-m3-cA
28 3bzq-a1-m2-cA 99 98 0.5556 0.5556 0.5612 2.06e-34 3bzq-a1-m2-cA_3bzq-a1-m3-cA
29 3lf0-a1-m1-cB 112 111 0.5657 0.5000 0.5045 4.55e-33 3lf0-a1-m1-cC_3lf0-a1-m1-cB
30 1ul3-a2-m3-cD 95 93 0.5556 0.5789 0.5914 5.19e-33 1ul3-a2-m2-cD_1ul3-a2-m3-cD
31 1ul3-a2-m2-cD 95 93 0.5556 0.5789 0.5914 5.19e-33 1ul3-a2-m2-cD_1ul3-a2-m3-cD
32 7p4v-a1-m3-cA 113 112 0.5859 0.5133 0.5179 5.64e-33 7p4v-a1-m2-cA_7p4v-a1-m3-cA
33 7p4v-a1-m2-cA 113 112 0.5859 0.5133 0.5179 5.64e-33 7p4v-a1-m2-cA_7p4v-a1-m3-cA
34 4c3l-a1-m3-cA 89 92 0.5859 0.6517 0.6304 6.84e-33 4c3l-a1-m2-cA_4c3l-a1-m3-cA
35 4c3l-a1-m2-cA 89 92 0.5859 0.6517 0.6304 6.84e-33 4c3l-a1-m2-cA_4c3l-a1-m3-cA
36 2o66-a2-m2-cA 107 95 0.5354 0.4953 0.5579 3.79e-32 2o66-a2-m2-cC_2o66-a2-m2-cA
37 2o66-a2-m1-cA 107 95 0.5354 0.4953 0.5579 3.79e-32 2o66-a2-m2-cC_2o66-a2-m1-cA
38 1ul3-a3-m5-cA 95 98 0.5455 0.5684 0.5510 1.37e-31 1ul3-a3-m1-cC_1ul3-a3-m5-cA, 1ul3-a3-m4-cB_1ul3-a3-m5-cA
39 7p50-a1-m1-cC 115 112 0.5758 0.4957 0.5089 1.57e-31 7p50-a1-m1-cB_7p50-a1-m1-cC
40 7p50-a1-m1-cB 115 112 0.5758 0.4957 0.5089 1.57e-31 7p50-a1-m1-cB_7p50-a1-m1-cC
41 1ul3-a3-m4-cB 94 98 0.5455 0.5745 0.5510 2.84e-31 1ul3-a3-m4-cB_1ul3-a3-m5-cA
42 1ul3-a3-m1-cC 94 98 0.5455 0.5745 0.5510 2.84e-31 1ul3-a3-m1-cC_1ul3-a3-m5-cA
43 2o66-a2-m2-cC 106 95 0.5253 0.4906 0.5474 2.84e-30 2o66-a2-m2-cC_2o66-a2-m1-cA, 2o66-a2-m2-cC_2o66-a2-m2-cA
44 1hwu-a3-m2-cF 91 98 0.5960 0.6484 0.6020 6.73e-30 1hwu-a3-m2-cE_1hwu-a3-m2-cF, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
45 3ncp-a6-m4-cC 100 99 0.5657 0.5600 0.5657 8.14e-30 3ncp-a6-m5-cD_3ncp-a6-m4-cC
46 3ncp-a6-m5-cD 99 99 0.5657 0.5657 0.5657 8.27e-30 3ncp-a6-m4-cD_3ncp-a6-m5-cD, 3ncp-a6-m5-cD_3ncp-a6-m4-cC
47 3ncp-a6-m4-cD 99 99 0.5657 0.5657 0.5657 8.27e-30 3ncp-a6-m4-cD_3ncp-a6-m5-cD
48 1hwu-a3-m2-cE 84 91 0.5657 0.6667 0.6154 4.62e-29 1hwu-a3-m2-cE_1hwu-a3-m2-cF
49 2rd5-a1-m3-cD 126 110 0.5354 0.4206 0.4818 4.22e-28 2rd5-a1-m2-cD_2rd5-a1-m3-cD
50 2rd5-a1-m2-cD 126 110 0.5354 0.4206 0.4818 4.22e-28 2rd5-a1-m2-cD_2rd5-a1-m3-cD
51 3t9z-a2-m1-cF 94 97 0.5051 0.5319 0.5155 1.92e-27 3t9z-a2-m1-cD_3t9z-a2-m1-cF
52 7p52-a1-m3-cA 111 111 0.5455 0.4865 0.4865 2.55e-27 7p52-a1-m2-cA_7p52-a1-m3-cA
53 7p52-a1-m2-cA 111 111 0.5455 0.4865 0.4865 2.55e-27 7p52-a1-m2-cA_7p52-a1-m3-cA
54 3t9z-a2-m1-cD 93 92 0.4848 0.5161 0.5217 7.84e-27 3t9z-a2-m1-cD_3t9z-a2-m1-cF
55 3ta2-a2-m5-cB 109 106 0.5051 0.4587 0.4717 4.03e-26 3ta2-a2-m4-cB_3ta2-a2-m5-cB
56 3ta2-a2-m4-cB 109 106 0.5051 0.4587 0.4717 4.03e-26 3ta2-a2-m4-cB_3ta2-a2-m5-cB
57 3l7p-a1-m1-cB 88 90 0.4747 0.5341 0.5222 1.43e-23 3l7p-a1-m1-cB_3l7p-a1-m1-cF
58 3l7p-a1-m1-cF 88 90 0.4646 0.5227 0.5111 6.81e-23 3l7p-a1-m1-cB_3l7p-a1-m1-cF, 3l7p-a1-m1-cF_3l7p-a1-m1-cC
59 3l7p-a1-m1-cC 91 92 0.4747 0.5165 0.5109 1.03e-21 3l7p-a1-m1-cF_3l7p-a1-m1-cC
60 1ufl-a2-m2-cC 99 99 0.4242 0.4242 0.4242 4.19e-21 1ufl-a2-m2-cC_1ufl-a2-m1-cA
61 1v3r-a1-m1-cA 92 95 0.4141 0.4457 0.4316 4.46e-20 1v3r-a1-m1-cC_1v3r-a1-m1-cA
62 7o4x-a1-m3-cA 103 100 0.3939 0.3786 0.3900 8.65e-20 7o4x-a1-m2-cA_7o4x-a1-m3-cA
63 7o4x-a1-m2-cA 103 100 0.3939 0.3786 0.3900 8.65e-20 7o4x-a1-m2-cA_7o4x-a1-m3-cA
64 1v3r-a1-m1-cC 90 92 0.4141 0.4556 0.4457 1.16e-19 1v3r-a1-m1-cC_1v3r-a1-m1-cA
65 1ufl-a2-m1-cA 108 106 0.4242 0.3889 0.3962 1.68e-19 1ufl-a2-m2-cC_1ufl-a2-m1-cA
66 4ozn-a1-m1-cC 113 105 0.4747 0.4159 0.4476 1.04e-18 4ozn-a1-m1-cC_4ozn-a1-m1-cA
67 4ozn-a1-m1-cA 116 109 0.4747 0.4052 0.4312 4.14e-18 4ozn-a1-m1-cC_4ozn-a1-m1-cA
68 4usj-a1-m3-cD 142 105 0.3939 0.2746 0.3714 3.59e-15 4usj-a1-m2-cD_4usj-a1-m3-cD
69 4usj-a1-m2-cD 142 105 0.3939 0.2746 0.3714 3.59e-15 4usj-a1-m2-cD_4usj-a1-m3-cD
70 4r25-a1-m3-cA 114 112 0.3434 0.2982 0.3036 5.24e-13 4r25-a1-m2-cA_4r25-a1-m3-cA
71 4r25-a1-m2-cA 114 112 0.3434 0.2982 0.3036 5.24e-13 4r25-a1-m2-cA_4r25-a1-m3-cA
72 4uds-a1-m2-cA 183 52 0.1515 0.0820 0.2885 2.5 4uds-a1-m1-cA_4uds-a1-m2-cA
73 4uds-a1-m1-cA 183 52 0.1515 0.0820 0.2885 2.5 4uds-a1-m1-cA_4uds-a1-m2-cA
74 3lwb-a1-m1-cB 298 34 0.1313 0.0436 0.3824 3.4 3lwb-a1-m1-cB_3lwb-a1-m1-cA
75 3lwb-a1-m1-cA 323 34 0.1313 0.0402 0.3824 5.1 3lwb-a1-m1-cB_3lwb-a1-m1-cA
76 3ezq-a4-m1-cO 115 49 0.1616 0.1391 0.3265 5.4 3ezq-a4-m1-cM_3ezq-a4-m1-cO
77 3ezq-a4-m1-cM 115 49 0.1616 0.1391 0.3265 5.4 3ezq-a4-m1-cM_3ezq-a4-m1-cO
78 4iv6-a1-m2-cA 382 35 0.1313 0.0340 0.3714 7.0 4iv6-a1-m2-cA_4iv6-a1-m2-cB
79 4iv6-a1-m1-cA 382 35 0.1313 0.0340 0.3714 7.0 4iv6-a1-m1-cA_4iv6-a1-m2-cB
80 4iv6-a1-m2-cB 383 35 0.1313 0.0339 0.3714 7.1 4iv6-a1-m1-cA_4iv6-a1-m2-cB, 4iv6-a1-m1-cB_4iv6-a1-m2-cB, 4iv6-a1-m2-cA_4iv6-a1-m2-cB
81 4iv6-a1-m1-cB 383 35 0.1313 0.0339 0.3714 7.1 4iv6-a1-m1-cB_4iv6-a1-m2-cB
82 2gb3-a3-m1-cE 382 46 0.1818 0.0471 0.3913 7.5 2gb3-a3-m1-cF_2gb3-a3-m1-cE
83 2gb3-a3-m1-cF 379 46 0.1818 0.0475 0.3913 7.7 2gb3-a3-m1-cF_2gb3-a3-m1-cE
84 8dh0-a1-m1-cJ 805 37 0.1616 0.0199 0.4324 9.3 8dh0-a1-m1-cJ_8dh0-a1-m1-cB
85 8dh0-a1-m1-cB 840 37 0.1616 0.0190 0.4324 9.5 8dh0-a1-m1-cF_8dh0-a1-m1-cB, 8dh0-a1-m1-cJ_8dh0-a1-m1-cB
86 8dh0-a1-m1-cF 796 37 0.1616 0.0201 0.4324 9.5 8dh0-a1-m1-cF_8dh0-a1-m1-cB
87 7pqh-a1-m1-cB 1208 25 0.0909 0.0075 0.3600 9.8 7pqh-a1-m1-cB_7pqh-a1-m1-cJ
88 7pqh-a1-m1-cJ 1213 25 0.0909 0.0074 0.3600 9.8 7pqh-a1-m1-cB_7pqh-a1-m1-cJ

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Reference:
Jacob Schwartz et al.

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