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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=90)
PPGNLRVTDVTSTSVTLSWRGYPWATGYRVEYREAGGEWKEVTVPGDLSHRYTVTGLKPG
TEYEFRVRAVNRVGRTFSVSVTTGHHHHHH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5j7k-a2-m1-cB 90 90 1.0000 1.0000 1.0000 3.60e-61 5j7k-a2-m1-cF_5j7k-a2-m1-cB
2 5j7k-a2-m1-cG 85 86 0.9222 0.9765 0.9651 7.56e-53 5j7k-a2-m1-cD_5j7k-a2-m1-cG
3 5j7k-a1-m1-cA 84 87 0.9111 0.9762 0.9425 5.29e-52 5j7k-a1-m1-cC_5j7k-a1-m1-cA
4 5j7k-a2-m1-cF 79 85 0.8667 0.9873 0.9176 5.14e-49 5j7k-a2-m1-cF_5j7k-a2-m1-cB
5 5j7k-a1-m1-cC 78 87 0.8667 1.0000 0.8966 9.29e-47 5j7k-a1-m1-cC_5j7k-a1-m1-cA
6 5j7k-a2-m1-cD 54 80 0.5333 0.8889 0.6000 7.98e-17 5j7k-a2-m1-cD_5j7k-a2-m1-cG
7 4lpu-a1-m1-cB 93 90 0.4111 0.3978 0.4111 4.86e-12 4lpu-a1-m1-cA_4lpu-a1-m1-cB
8 4lpu-a1-m1-cA 93 90 0.4111 0.3978 0.4111 4.86e-12 4lpu-a1-m1-cA_4lpu-a1-m1-cB
9 4yfg-a1-m1-cB 481 77 0.3556 0.0665 0.4156 7.75e-11 4yfg-a1-m1-cA_4yfg-a1-m1-cB
10 4yfg-a1-m1-cA 481 77 0.3556 0.0665 0.4156 7.75e-11 4yfg-a1-m1-cA_4yfg-a1-m1-cB
11 3b83-a1-m8-cG 99 100 0.3778 0.3434 0.3400 8.86e-08 3b83-a1-m2-cA_3b83-a1-m8-cG, 3b83-a1-m2-cE_3b83-a1-m8-cG
12 3b83-a1-m4-cE 99 100 0.3778 0.3434 0.3400 8.86e-08 3b83-a1-m1-cC_3b83-a1-m4-cE, 3b83-a1-m4-cC_3b83-a1-m4-cE, 3b83-a1-m4-cF_3b83-a1-m4-cE
13 3b83-a1-m4-cC 99 100 0.3778 0.3434 0.3400 8.86e-08 3b83-a1-m4-cC_3b83-a1-m4-cE
14 3b83-a1-m2-cE 99 100 0.3778 0.3434 0.3400 8.86e-08 3b83-a1-m2-cE_3b83-a1-m8-cG
15 3b83-a1-m1-cC 99 100 0.3778 0.3434 0.3400 8.86e-08 3b83-a1-m1-cC_3b83-a1-m4-cE
16 2ck2-a1-m1-cA 94 72 0.3222 0.3085 0.4028 2.20e-07 2ck2-a1-m1-cA_2ck2-a1-m1-cB
17 2ck2-a1-m1-cB 96 72 0.3222 0.3021 0.4028 2.37e-07 2ck2-a1-m1-cA_2ck2-a1-m1-cB
18 6bqo-a2-m2-cC 95 72 0.3333 0.3158 0.4167 7.24e-07 6bqo-a2-m1-cC_6bqo-a2-m2-cC
19 6bqo-a2-m1-cC 95 72 0.3333 0.3158 0.4167 7.24e-07 6bqo-a2-m1-cC_6bqo-a2-m2-cC
20 7mrm-a1-m1-cB 360 83 0.3111 0.0778 0.3373 7.80e-06 7mrm-a1-m1-cB_7mrm-a1-m1-cA
21 7mrm-a1-m1-cA 365 83 0.3111 0.0767 0.3373 8.29e-06 7mrm-a1-m1-cB_7mrm-a1-m1-cA
22 1bqu-a1-m1-cA 208 82 0.2889 0.1250 0.3171 9.49e-06 1bqu-a1-m1-cA_1bqu-a1-m1-cB
23 3b83-a1-m2-cA 95 95 0.3444 0.3263 0.3263 2.06e-05 3b83-a1-m2-cA_3b83-a1-m8-cG, 3b83-a1-m8-cB_3b83-a1-m2-cA
24 3b83-a1-m8-cB 92 88 0.3333 0.3261 0.3409 3.58e-05 3b83-a1-m8-cB_3b83-a1-m2-cA, 3b83-a1-m8-cD_3b83-a1-m8-cB
25 3b83-a1-m4-cF 92 88 0.3333 0.3261 0.3409 3.58e-05 3b83-a1-m4-cF_3b83-a1-m4-cE
26 3b83-a5-m1-cH 94 88 0.3333 0.3191 0.3409 3.60e-05 3b83-a5-m1-cD_3b83-a5-m1-cH
27 3b83-a1-m8-cH 94 88 0.3333 0.3191 0.3409 3.60e-05 3b83-a1-m5-cD_3b83-a1-m8-cH
28 3b83-a5-m1-cD 91 88 0.3333 0.3297 0.3409 3.71e-05 3b83-a5-m1-cD_3b83-a5-m1-cH
29 3b83-a1-m8-cD 91 88 0.3333 0.3297 0.3409 3.71e-05 3b83-a1-m8-cD_3b83-a1-m8-cB
30 3b83-a1-m5-cD 91 88 0.3333 0.3297 0.3409 3.71e-05 3b83-a1-m5-cD_3b83-a1-m8-cH
31 7y8s-a1-m1-cA 275 76 0.2778 0.0909 0.3289 5.28e-05 7y8s-a1-m1-cA_7y8s-a1-m1-cB
32 7y8s-a1-m1-cA 275 85 0.2667 0.0873 0.2824 0.28 7y8s-a1-m1-cA_7y8s-a1-m1-cB
33 7y8s-a1-m1-cB 288 76 0.2778 0.0868 0.3289 5.71e-05 7y8s-a1-m1-cA_7y8s-a1-m1-cB
34 7y8s-a1-m1-cB 288 85 0.2667 0.0833 0.2824 0.32 7y8s-a1-m1-cA_7y8s-a1-m1-cB
35 7y8s-a1-m1-cB 288 78 0.2222 0.0694 0.2564 1.8 7y8s-a1-m1-cA_7y8s-a1-m1-cB
36 1bqu-a1-m1-cB 215 84 0.2889 0.1209 0.3095 5.81e-04 1bqu-a1-m1-cA_1bqu-a1-m1-cB
37 5myb-a1-m1-cB 191 81 0.2222 0.1047 0.2469 0.003 5myb-a1-m1-cA_5myb-a1-m1-cB
38 5myb-a1-m1-cA 190 81 0.2222 0.1053 0.2469 0.003 5myb-a1-m1-cA_5myb-a1-m1-cB
39 2rbl-a1-m1-cB 89 80 0.2556 0.2584 0.2875 0.006 2rbl-a1-m1-cA_2rbl-a1-m1-cB
40 2rbl-a1-m1-cA 89 80 0.2556 0.2584 0.2875 0.006 2rbl-a1-m1-cA_2rbl-a1-m1-cB
41 3t1w-a1-m2-cA 368 85 0.2778 0.0679 0.2941 0.008 3t1w-a1-m1-cA_3t1w-a1-m2-cA
42 3t1w-a1-m2-cA 368 74 0.2889 0.0707 0.3514 0.026 3t1w-a1-m1-cA_3t1w-a1-m2-cA
43 3t1w-a1-m2-cA 368 75 0.2556 0.0625 0.3067 0.084 3t1w-a1-m1-cA_3t1w-a1-m2-cA
44 3t1w-a1-m1-cA 368 85 0.2778 0.0679 0.2941 0.008 3t1w-a1-m1-cA_3t1w-a1-m2-cA
45 3t1w-a1-m1-cA 368 74 0.2889 0.0707 0.3514 0.026 3t1w-a1-m1-cA_3t1w-a1-m2-cA
46 3t1w-a1-m1-cA 368 75 0.2556 0.0625 0.3067 0.084 3t1w-a1-m1-cA_3t1w-a1-m2-cA
47 5utk-a1-m1-cA 289 80 0.2333 0.0727 0.2625 0.011 5utk-a1-m1-cB_5utk-a1-m1-cA
48 5x83-a1-m1-cD 195 81 0.2889 0.1333 0.3210 0.011 5x83-a1-m1-cD_5x83-a1-m1-cB
49 5e7t-a1-m3-cA 129 20 0.1444 0.1008 0.6500 0.055 5e7t-a1-m2-cA_5e7t-a1-m3-cA
50 5e7t-a1-m2-cA 129 20 0.1444 0.1008 0.6500 0.055 5e7t-a1-m2-cA_5e7t-a1-m3-cA
51 5x83-a1-m1-cB 202 85 0.2889 0.1287 0.3059 0.063 5x83-a1-m1-cD_5x83-a1-m1-cB
52 3g1w-a1-m1-cB 284 39 0.1556 0.0493 0.3590 0.15 3g1w-a1-m1-cB_3g1w-a1-m1-cA
53 5utk-a1-m1-cB 280 81 0.2222 0.0714 0.2469 0.15 5utk-a1-m1-cB_5utk-a1-m1-cA
54 3g1w-a1-m1-cA 285 39 0.1556 0.0491 0.3590 0.15 3g1w-a1-m1-cB_3g1w-a1-m1-cA
55 6f5z-a1-m1-cB 228 65 0.2556 0.1009 0.3538 0.32 6f5z-a1-m1-cA_6f5z-a1-m1-cB
56 8d7h-a1-m1-cE 303 80 0.2778 0.0825 0.3125 0.35 8d7h-a1-m1-cA_8d7h-a1-m1-cE
57 8d7h-a1-m1-cA 303 80 0.2778 0.0825 0.3125 0.35 8d7h-a1-m1-cA_8d7h-a1-m1-cE
58 3mtr-a1-m1-cA 197 66 0.2667 0.1218 0.3636 0.65 3mtr-a1-m1-cA_3mtr-a1-m1-cB
59 5n06-a1-m1-cA 93 74 0.2556 0.2473 0.3108 0.75 5n06-a1-m1-cB_5n06-a1-m1-cA
60 3mtr-a1-m1-cB 197 66 0.2667 0.1218 0.3636 0.76 3mtr-a1-m1-cA_3mtr-a1-m1-cB
61 2vkw-a1-m1-cA 197 66 0.2667 0.1218 0.3636 0.88 2vkw-a1-m1-cB_2vkw-a1-m1-cA
62 4yg8-a2-m6-cA 276 88 0.2556 0.0833 0.2614 0.89 4yg8-a2-m3-cA_4yg8-a2-m6-cA
63 4yg8-a2-m3-cA 276 88 0.2556 0.0833 0.2614 0.89 4yg8-a2-m3-cA_4yg8-a2-m6-cA
64 2vkw-a1-m1-cB 195 66 0.2667 0.1231 0.3636 0.95 2vkw-a1-m1-cB_2vkw-a1-m1-cA
65 2vkx-a2-m1-cD 198 66 0.2667 0.1212 0.3636 0.97 2vkx-a2-m1-cC_2vkx-a2-m1-cD
66 2vkx-a2-m1-cC 198 66 0.2667 0.1212 0.3636 0.97 2vkx-a2-m1-cC_2vkx-a2-m1-cD
67 7bu2-a1-m1-cB 339 59 0.1778 0.0472 0.2712 1.6 7bu2-a1-m1-cA_7bu2-a1-m1-cB
68 7bu2-a1-m1-cA 337 59 0.1778 0.0475 0.2712 1.7 7bu2-a1-m1-cA_7bu2-a1-m1-cB
69 7bu3-a1-m1-cA 336 59 0.1778 0.0476 0.2712 1.7 7bu3-a1-m1-cA_7bu3-a1-m1-cB
70 7bu3-a1-m1-cB 337 59 0.1778 0.0475 0.2712 1.7 7bu3-a1-m1-cA_7bu3-a1-m1-cB
71 8a1f-a1-m1-cB 352 42 0.2000 0.0511 0.4286 2.3 8a1f-a1-m1-cB_8a1f-a1-m1-cA
72 8a1f-a1-m1-cA 353 42 0.2000 0.0510 0.4286 2.3 8a1f-a1-m1-cB_8a1f-a1-m1-cA
73 4bkf-a1-m1-cB 505 69 0.2222 0.0396 0.2899 2.9 4bkf-a1-m1-cA_4bkf-a1-m1-cB
74 4bkf-a1-m1-cB 505 109 0.3444 0.0614 0.2844 4.5 4bkf-a1-m1-cA_4bkf-a1-m1-cB
75 4bkf-a1-m1-cA 505 69 0.2222 0.0396 0.2899 2.9 4bkf-a1-m1-cA_4bkf-a1-m1-cB
76 4bkf-a1-m1-cA 505 109 0.3444 0.0614 0.2844 4.5 4bkf-a1-m1-cA_4bkf-a1-m1-cB
77 7cg8-a1-m1-cC 100 23 0.1222 0.1100 0.4783 5.3 7cg8-a1-m1-cC_7cg8-a1-m1-cD
78 7cg8-a1-m1-cD 105 23 0.1222 0.1048 0.4783 6.2 7cg8-a1-m1-cA_7cg8-a1-m1-cD, 7cg8-a1-m1-cB_7cg8-a1-m1-cD, 7cg8-a1-m1-cC_7cg8-a1-m1-cD
79 7cg8-a1-m1-cB 105 23 0.1222 0.1048 0.4783 6.2 7cg8-a1-m1-cB_7cg8-a1-m1-cD
80 7cg8-a1-m1-cA 105 23 0.1222 0.1048 0.4783 6.2 7cg8-a1-m1-cA_7cg8-a1-m1-cD
81 3a70-a1-m1-cA 608 30 0.1333 0.0197 0.4000 6.5 3a70-a1-m1-cA_3a70-a1-m1-cC
82 7tyk-a1-m1-cB 809 70 0.2111 0.0235 0.2714 8.5 7tyk-a1-m1-cA_7tyk-a1-m1-cB
83 7tyk-a1-m1-cA 809 70 0.2111 0.0235 0.2714 8.5 7tyk-a1-m1-cA_7tyk-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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