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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=23)
PPGPPGPPGPGPPGPPGPPGPPG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3a0a-a3-m1-cC 23 23 1.0000 1.0000 1.0000 0.004 3a0a-a3-m1-cB_3a0a-a3-m1-cC
2 2d3f-a3-m1-cF 26 23 1.0000 0.8846 1.0000 0.006 2d3f-a3-m1-cE_2d3f-a3-m1-cF
3 2d3f-a3-m1-cF 26 23 0.9130 0.8077 0.9130 1.6 2d3f-a3-m1-cE_2d3f-a3-m1-cF
4 2d3f-a3-m1-cE 26 23 1.0000 0.8846 1.0000 0.006 2d3f-a3-m1-cE_2d3f-a3-m1-cF
5 2d3f-a3-m1-cE 26 23 0.9130 0.8077 0.9130 1.6 2d3f-a3-m1-cE_2d3f-a3-m1-cF
6 1x1k-a1-m1-cD 26 23 1.0000 0.8846 1.0000 0.006 1x1k-a1-m1-cB_1x1k-a1-m1-cD
7 1x1k-a1-m1-cD 26 23 0.9130 0.8077 0.9130 1.6 1x1k-a1-m1-cB_1x1k-a1-m1-cD
8 1x1k-a1-m1-cB 26 23 1.0000 0.8846 1.0000 0.006 1x1k-a1-m1-cB_1x1k-a1-m1-cD
9 1x1k-a1-m1-cB 26 23 0.9130 0.8077 0.9130 1.6 1x1k-a1-m1-cB_1x1k-a1-m1-cD
10 2d3f-a3-m1-cC 25 22 0.9565 0.8800 1.0000 0.020 2d3f-a3-m1-cA_2d3f-a3-m1-cC
11 2d3f-a3-m1-cC 25 23 0.9130 0.8400 0.9130 1.4 2d3f-a3-m1-cA_2d3f-a3-m1-cC
12 2d3f-a3-m1-cA 25 22 0.9565 0.8800 1.0000 0.020 2d3f-a3-m1-cA_2d3f-a3-m1-cC
13 2d3f-a3-m1-cA 25 23 0.9130 0.8400 0.9130 1.4 2d3f-a3-m1-cA_2d3f-a3-m1-cC
14 2d3h-a2-m1-cF 22 23 0.9565 1.0000 0.9565 0.59 2d3h-a2-m1-cF_2d3h-a2-m1-cD
15 2d3h-a2-m1-cD 23 23 0.9565 0.9565 0.9565 0.67 2d3h-a2-m1-cF_2d3h-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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