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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=15)
PPGPPGPPGPRGPPG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4au3-a2-m1-cJ 15 15 1.0000 1.0000 1.0000 0.18 4au3-a2-m1-cJ_4au3-a2-m1-cH, 4au3-a2-m1-cJ_4au3-a2-m1-cI
2 4au3-a2-m1-cI 16 15 1.0000 0.9375 1.0000 0.23 4au3-a2-m1-cI_4au3-a2-m1-cH, 4au3-a2-m1-cJ_4au3-a2-m1-cI
3 4au3-a2-m1-cH 17 15 1.0000 0.8824 1.0000 0.27 4au3-a2-m1-cI_4au3-a2-m1-cH, 4au3-a2-m1-cJ_4au3-a2-m1-cH
4 4au3-a1-m1-cE 15 14 0.9333 0.9333 1.0000 0.53 4au3-a1-m1-cE_4au3-a1-m1-cF
5 4au3-a1-m1-cF 16 14 0.9333 0.8750 1.0000 0.64 4au3-a1-m1-cE_4au3-a1-m1-cF
6 6syj-a1-m1-cC 29 15 1.0000 0.5172 1.0000 1.1 6syj-a1-m1-cB_6syj-a1-m1-cC
7 6syj-a1-m1-cB 29 15 1.0000 0.5172 1.0000 1.1 6syj-a1-m1-cB_6syj-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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